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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035141 through 18771 annotations produced 1 hits



Cyclophilin-like (Cypl):

Annotation Number : CG13892
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035141
Gbrowse : chr3L:542116-542916 (-) // 100.0 //
Probeset : 1639357_at
Accessions : protein= NP_523874;, nucleotide= NM_079150;
Pathway : via spliceosome // inferred by curator /// 0006457 // protein folding // inferred from electronic annotation /// 004804
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferre
FlyMine data for FBgn0035141.
BDGP gene expression has embryonic in situ data for Cypl: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035141 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 34 of 4 1.00None
Head56 04 of 4 0.80None
Eye80 24 of 4 1.11None
Thoracicoabdominal ganglion81 34 of 4 1.10None
Salivary gland35 62 of 4 0.49Down
Crop57 24 of 4 0.80None
Midgut45 24 of 4 0.60Down
Tubule33 13 of 4 0.50Down
Hindgut39 24 of 4 0.50Down
Heart52 44 of 4 0.72None
Fat body37 83 of 4 0.52Down
Ovary164 34 of 4 2.30Up
Testis50 14 of 4 0.70Down
Male accessory glands114 54 of 4 1.60Up
Virgin spermatheca35 14 of 4 0.48Down
Mated spermatheca38 34 of 4 0.53Down
Adult carcass53 43 of 4 0.70None
Larval CNS170 144 of 4 2.36Up
Larval Salivary gland98 54 of 4 1.36Up
Larval midgut28 14 of 4 0.39Down
Larval tubule44 34 of 4 0.60Down
Larval hindgut45 14 of 4 0.63Down
Larval fat body54 74 of 4 0.80None
Larval trachea88 84 of 4 1.23None
Larval carcass37 14 of 4 0.51Down
S2 cells (growing)84 34 of 4 1.16None
Whole fly72 74 of 4

Looking for FBgn0035141. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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