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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035142 through 18771 annotations produced 1 hits



Homeodomain interacting protein kinase (hipk):

Annotation Number : CG17090
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035142
Gbrowse : chr3L:543069-576055 (+) // 99.84 //
Probeset : 1639306_s_at
Accessions : protein= NP_612038; /// NP_728531;, nucleotide= NM_138194; /// NM_167834;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0035142.
Homophila reports that CG17090 is a close match (2e-18) to human gene MAPK10;PRKM10;JNK3 (NP_620447), a gene associated with Epileptic encephalopathy, Lennox-Gastaut type, 606369 (3).
TRiP has 1 RNAi stocks for FBgn0035142 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035142 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1114 ± 384 of 4 6.20Up
Head242 ± 464 of 4 1.30None
Eye893 ± 944 of 4 4.95Up
Thoracicoabdominal ganglion980 ± 934 of 4 5.40Up
Salivary gland219 ± 884 of 4 1.22None
Crop640 ± 444 of 4 3.50Up
Midgut420 ± 84 of 4 2.30Up
Tubule98 ± 74 of 4 0.50Down
Hindgut472 ± 274 of 4 2.60Up
Heart751 ± 304 of 4 4.16Up
Fat body385 ± 804 of 4 2.14Up
Ovary278 ± 144 of 4 1.50Up
Testis88 ± 84 of 4 0.50None
Male accessory glands289 ± 274 of 4 1.60Up
Virgin spermatheca185 ± 74 of 4 1.03None
Mated spermatheca186 ± 284 of 4 1.03None
Adult carcass279 ± 694 of 4 1.50None
Larval CNS832 ± 1134 of 4 4.61Up
Larval Salivary gland640 ± 1184 of 4 3.55Up
Larval midgut263 ± 174 of 4 1.46None
Larval tubule754 ± 424 of 4 4.20Up
Larval hindgut477 ± 634 of 4 2.64Up
Larval fat body204 ± 164 of 4 1.10None
Larval trachea642 ± 394 of 4 3.56Up
Larval carcass287 ± 594 of 4 1.59None
S2 cells (growing)619 ± 194 of 4 3.43Up
Whole fly180 ± 314 of 4

Looking for FBgn0035142. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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