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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035144 through 18771 annotations produced 1 hits



(CG17181):

Annotation Number : CG17181
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035144
Gbrowse : chr3L:583983-589272 (-) // 100.0 //
Probeset : 1633816_at
Accessions : protein= NP_612040;, nucleotide= NM_138196;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0035144.
Homophila reports that CG17181 is a close match (5e-11) to human gene WT1 (NP_077744), a gene associated with Denys-Drash syndrome, 194080 (3);Frasier syndrome, 136680 (3);Mesangial sclerosis, isolated diffuse, 256370 (3);WAGR syndrome, 194072 (3);Wilms tumor, type 1, 194070 (3).
BioGrid reports that CG17181 interacts with CG5683 .
TRiP has 1 RNAi stocks for FBgn0035144 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035144 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head5 ± 31 of 4 0.50None
Eye1 ± 00 of 4 0.16Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland1 ± 00 of 4 0.16Down
Crop19 ± 23 of 4 2.00Up
Midgut5 ± 10 of 4 0.50None
Tubule2 ± 00 of 4 0.20Down
Hindgut3 ± 10 of 4 0.40Down
Heart4 ± 11 of 4 0.46Down
Fat body3 ± 20 of 4 0.36Down
Ovary0 ± 00 of 4 0.10Down
Testis3 ± 10 of 4 0.40Down
Male accessory glands3 ± 10 of 4 0.30Down
Virgin spermatheca3 ± 10 of 4 0.34Down
Mated spermatheca2 ± 00 of 4 0.26Down
Adult carcass20 ± 32 of 4 2.10None
Larval CNS0 ± 00 of 4 0.07Down
Larval Salivary gland2 ± 10 of 4 0.29Down
Larval midgut5 ± 10 of 4 0.54None
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.32Down
Larval fat body4 ± 10 of 4 0.50Down
Larval trachea0 ± 00 of 4 0.09Down
Larval carcass9 ± 32 of 4 1.01None
S2 cells (growing)124 ± 44 of 413.01Up
Whole fly9 ± 13 of 4

Looking for FBgn0035144. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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