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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035146 through 18771 annotations produced 1 hits



(CG13893):

Annotation Number : CG13893
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035146
Gbrowse : chr3L:599090-604001 (-) // 100.0 //
Probeset : 1636193_at
Accessions : protein= NP_612042;, nucleotide= NM_138198;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0035146.
BDGP gene expression has embryonic in situ data for CG13893: 19 pix of staining in 6 body parts.
VDRC has 2 RNAi stocks for FBgn0035146 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain230 34 of 4 1.50Up
Head185 54 of 4 1.20None
Eye140 64 of 4 0.91None
Thoracicoabdominal ganglion241 84 of 4 1.60Up
Salivary gland595 424 of 4 3.84Up
Crop96 24 of 4 0.60None
Midgut413 94 of 4 2.70Up
Tubule98 134 of 4 0.60Down
Hindgut74 34 of 4 0.50Down
Heart40 64 of 4 0.26Down
Fat body18 34 of 4 0.12Down
Ovary47 64 of 4 0.30Down
Testis60 14 of 4 0.40Down
Male accessory glands94 84 of 4 0.60Down
Virgin spermatheca47 34 of 4 0.31Down
Mated spermatheca55 74 of 4 0.36Down
Adult carcass107 84 of 4 0.70None
Larval CNS107 94 of 4 0.70None
Larval Salivary gland172 104 of 4 1.11None
Larval midgut1737 3774 of 411.20Up
Larval tubule353 204 of 4 2.30Up
Larval hindgut660 1024 of 4 4.26Up
Larval fat body43 54 of 4 0.30Down
Larval trachea107 674 of 4 0.69None
Larval carcass61 44 of 4 0.40Down
S2 cells (growing)62 44 of 4 0.40Down
Whole fly155 194 of 4

Looking for FBgn0035146. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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