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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035147 through 18771 annotations produced 1 hits



/// (CG12030 /// DsecCG12030):

Annotation Number : CG12030
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035147
Gbrowse : chr3L:648516-651313 (+) // 100.0 //
Probeset : 1638409_at
Accessions : protein= NP_612044;, nucleotide= NM_138200;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0003978 // UDP-glucose 4-epimerase activity //
FlyMine data for FBgn0035147.
BDGP gene expression has embryonic in situ data for CG12030: 29 pix of staining in 12 body parts.
Homophila reports that CG12030 is a close match (7e-128) to human gene GALE (NP_001008217), a gene associated with Galactose epimerase deficiency, 230350 (3).
BioGrid reports that CG12030 interacts with CG12030 CG6685 .
TRiP has 1 RNAi stocks for FBgn0035147 available for purchase.
VDRC has 4 RNAi stocks for FBgn0035147 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain168 ± 104 of 4 0.40Down
Head423 ± 224 of 4 1.10None
Eye181 ± 174 of 4 0.48Down
Thoracicoabdominal ganglion185 ± 134 of 4 0.50Down
Salivary gland3995 ± 2844 of 410.47Up
Crop285 ± 204 of 4 0.70Down
Midgut908 ± 404 of 4 2.40Up
Tubule2402 ± 584 of 4 6.30Up
Hindgut318 ± 174 of 4 0.80None
Heart797 ± 514 of 4 2.09Up
Fat body1635 ± 2784 of 4 4.29Up
Ovary170 ± 104 of 4 0.40Down
Testis107 ± 84 of 4 0.30Down
Male accessory glands828 ± 354 of 4 2.20Up
Virgin spermatheca1544 ± 1034 of 4 4.05Up
Mated spermatheca1000 ± 784 of 4 2.62Up
Adult carcass1183 ± 524 of 4 3.10Up
Larval CNS100 ± 124 of 4 0.26Down
Larval Salivary gland6325 ± 4054 of 416.58Up
Larval midgut722 ± 244 of 4 1.89Up
Larval tubule833 ± 124 of 4 2.20Up
Larval hindgut257 ± 104 of 4 0.67Down
Larval fat body320 ± 224 of 4 0.80None
Larval trachea58 ± 104 of 4 0.15Down
Larval carcass131 ± 64 of 4 0.35Down
S2 cells (growing)2509 ± 1024 of 4 6.58Up
Whole fly381 ± 264 of 4

Looking for FBgn0035147. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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