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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035150 through 18771 annotations produced 1 hits



chr3L:654360-657975 (+) // 100.0 // (Rev1):

Annotation Number : CG12189
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635299_at
Accessions : protein= , nucleotide= NP_612047;
Pathway : 0006281 // DNA repair // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from elec
Interpro : 0005622 // intracellular // inferred from electronic annotation
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 ± 24 of 4 0.90None
Head31 ± 24 of 4 0.50Down
Eye27 ± 44 of 4 0.43Down
Thoracicoabdominal ganglion55 ± 14 of 4 0.90None
Salivary gland56 ± 34 of 4 0.89None
Crop48 ± 24 of 4 0.80Down
Midgut20 ± 14 of 4 0.30Down
Tubule35 ± 14 of 4 0.60Down
Hindgut30 ± 14 of 4 0.50Down
Heart18 ± 14 of 4 0.30Down
Fat body23 ± 24 of 4 0.37Down
Ovary132 ± 54 of 4 2.10Up
Testis98 ± 44 of 4 1.60Up
Male accessory glands40 ± 24 of 4 0.60Down
Virgin spermatheca27 ± 14 of 4 0.43Down
Mated spermatheca26 ± 04 of 4 0.42Down
Adult carcass31 ± 24 of 4 0.50Down
Larval CNS66 ± 64 of 4 1.06None
Larval Salivary gland42 ± 04 of 4 0.67Down
Larval midgut16 ± 24 of 4 0.27Down
Larval tubule23 ± 04 of 4 0.40Down
Larval hindgut34 ± 34 of 4 0.55Down
Larval fat body32 ± 44 of 4 0.50Down
Larval trachea36 ± 24 of 4 0.57Down
Larval carcass29 ± 34 of 4 0.47Down
S2 cells (growing)156 ± 54 of 4 2.47Up
Whole fly63 ± 24 of 4

Looking for FBgn0035150. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime