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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035151 through 18771 annotations produced 1 hits



(CG17129):

Annotation Number : CG17129
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035151
Gbrowse : chr3L:677871-680322 (-) // 100.0 //
Probeset : 1640281_s_at
Accessions : protein= NP_612048; /// NP_728536; /// NP_728537;, nucleotide= NM_138204; /// NM_167837; /// NM_167838;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035151.
BDGP gene expression has embryonic in situ data for CG17129: 4 pix of staining in 1 body parts.
BioGrid reports that CG17129 interacts with Dmel CG33691 .
VDRC has 2 RNAi stocks for FBgn0035151 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head10 ± 02 of 4 0.20Down
Eye15 ± 24 of 4 0.29Down
Thoracicoabdominal ganglion5 ± 20 of 4 0.10Down
Salivary gland31 ± 53 of 4 0.59Down
Crop16 ± 33 of 4 0.30Down
Midgut7 ± 10 of 4 0.10Down
Tubule19 ± 22 of 4 0.40Down
Hindgut21 ± 13 of 4 0.40Down
Heart5 ± 01 of 4 0.11Down
Fat body6 ± 40 of 4 0.13Down
Ovary137 ± 54 of 4 2.60Up
Testis277 ± 114 of 4 5.20Up
Male accessory glands26 ± 24 of 4 0.50Down
Virgin spermatheca13 ± 21 of 4 0.26Down
Mated spermatheca16 ± 33 of 4 0.31Down
Adult carcass9 ± 30 of 4 0.20Down
Larval CNS19 ± 34 of 4 0.36Down
Larval Salivary gland24 ± 24 of 4 0.46Down
Larval midgut11 ± 10 of 4 0.22Down
Larval tubule10 ± 20 of 4 0.20Down
Larval hindgut21 ± 14 of 4 0.40Down
Larval fat body49 ± 253 of 4 0.90None
Larval trachea59 ± 44 of 4 1.10None
Larval carcass8 ± 30 of 4 0.17Down
S2 cells (growing)28 ± 14 of 4 0.54Down
Whole fly53 ± 44 of 4

Looking for FBgn0035151. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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