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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035153 through 18771 annotations produced 1 hits


Annotation Number : CG3371
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035153
Gbrowse : chr3L:682878-685545 (-) // 100.0 //
Probeset : 1636161_at
Accessions : protein= NP_612050;, nucleotide= NM_138206;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from electronic annotation"
FlyMine data for FBgn0035153.
BDGP gene expression has embryonic in situ data for CG3371: 15 pix of staining in 19 body parts.
BioGrid reports that CG3371 interacts with CG7059 .
TRiP has 2 RNAi stocks for FBgn0035153 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035153 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain165 34 of 4 1.70Up
Head105 64 of 4 1.10None
Eye95 24 of 4 0.98None
Thoracicoabdominal ganglion146 44 of 4 1.50Up
Salivary gland121 34 of 4 1.24Up
Crop145 14 of 4 1.50Up
Midgut62 44 of 4 0.60Down
Tubule101 104 of 4 1.00None
Hindgut124 64 of 4 1.30Up
Heart55 24 of 4 0.57Down
Fat body65 74 of 4 0.67Down
Ovary223 34 of 4 2.30Up
Testis15 14 of 4 0.20Down
Male accessory glands93 64 of 4 0.90None
Virgin spermatheca130 54 of 4 1.33Up
Mated spermatheca158 54 of 4 1.61Up
Adult carcass90 14 of 4 0.90Down
Larval CNS169 114 of 4 1.73Up
Larval Salivary gland144 84 of 4 1.47Up
Larval midgut62 34 of 4 0.64Down
Larval tubule80 34 of 4 0.80Down
Larval hindgut86 64 of 4 0.88None
Larval fat body55 44 of 4 0.60Down
Larval trachea15 34 of 4 0.16Down
Larval carcass30 34 of 4 0.31Down
S2 cells (growing)243 54 of 4 2.49Up
Whole fly98 14 of 4

Looking for FBgn0035153. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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