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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035154 through 18771 annotations produced 1 hits


Annotation Number : CG3344
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035154
Gbrowse : chr3L:685941-687948 (-) // 100.0 //
Probeset : 1632584_at
Accessions : protein= NP_612051;, nucleotide= NM_138207;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004185 // serine-type carboxypeptidase
FlyMine data for FBgn0035154.
BDGP gene expression has embryonic in situ data for CG3344: 12 pix of staining in 3 body parts.
Homophila reports that CG3344 is a close match (1e-14) to human gene CTSA;GLB2;GSL;NGBE;PPGB (NP_000299), a gene associated with Galactosialidosis (3).
VDRC has 3 RNAi stocks for FBgn0035154 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 00 of 4 0.00Down
Head7 10 of 4 0.00Down
Eye9 22 of 4 0.05Down
Thoracicoabdominal ganglion4 10 of 4 0.00Down
Salivary gland16 80 of 4 0.09Down
Crop9 22 of 4 0.10Down
Midgut2765 814 of 414.70Up
Tubule9 11 of 4 0.00Down
Hindgut19 14 of 4 0.10Down
Heart6 10 of 4 0.03Down
Fat body15 33 of 4 0.08Down
Ovary3 10 of 4 0.00Down
Testis2 10 of 4 0.00Down
Male accessory glands12 10 of 4 0.10Down
Virgin spermatheca11 11 of 4 0.06Down
Mated spermatheca10 22 of 4 0.05Down
Adult carcass20 12 of 4 0.10Down
Larval CNS13 144 of 4 0.07Down
Larval Salivary gland128 204 of 4 0.68None
Larval midgut4463 864 of 423.72Up
Larval tubule8 00 of 4 0.00Down
Larval hindgut17 24 of 4 0.09Down
Larval fat body4 10 of 4 0.00Down
Larval trachea13 123 of 4 0.07Down
Larval carcass8 13 of 4 0.05Down
S2 cells (growing)5 10 of 4 0.03Down
Whole fly188 374 of 4

Looking for FBgn0035154. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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