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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035155 through 18771 annotations produced 1 hits



RabX6 (RabX6):

Annotation Number : CG12015
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035155
Gbrowse : chr3L:690518-691953 (+) // 100.0 //
Probeset : 1638167_at
Accessions : protein= NP_612052;, nucleotide= NM_138208;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0035155.
BDGP gene expression has embryonic in situ data for CG12015: 8 pix of staining in 1 body parts.
Homophila reports that CG12015 is a close match (1e-14) to human gene GS2;RAB27A;RAM (NP_899059), a gene associated with Griscelli syndrome, type 2, 607624 (3).
TRiP has 1 RNAi stocks for FBgn0035155 available for purchase.
VDRC has 5 RNAi stocks for FBgn0035155 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 24 of 4 1.70Up
Head66 14 of 4 1.20None
Eye154 74 of 4 2.68Up
Thoracicoabdominal ganglion106 54 of 4 1.80Up
Salivary gland113 104 of 4 1.97Up
Crop64 34 of 4 1.10None
Midgut46 34 of 4 0.80None
Tubule37 34 of 4 0.70Down
Hindgut48 24 of 4 0.80None
Heart73 14 of 4 1.27Up
Fat body103 14 of 4 1.79Up
Ovary136 14 of 4 2.40Up
Testis24 14 of 4 0.40Down
Male accessory glands45 44 of 4 0.80None
Virgin spermatheca65 44 of 4 1.14None
Mated spermatheca83 44 of 4 1.44Up
Adult carcass47 24 of 4 0.80None
Larval CNS124 64 of 4 2.16Up
Larval Salivary gland104 64 of 4 1.82Up
Larval midgut79 44 of 4 1.38Up
Larval tubule109 44 of 4 1.90Up
Larval hindgut70 64 of 4 1.22None
Larval fat body63 64 of 4 1.10None
Larval trachea78 74 of 4 1.36Up
Larval carcass69 24 of 4 1.21Up
S2 cells (growing)111 44 of 4 1.93Up
Whole fly57 34 of 4

Looking for FBgn0035155. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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