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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035157 through 18771 annotations produced 1 hits



(CG13894):

Annotation Number : CG13894
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035157
Gbrowse : chr3L:693087-699143 (-) // 100.0 //
Probeset : 1633656_at
Accessions : protein= NP_612054;, nucleotide= NM_138210;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0035157.
BDGP gene expression has embryonic in situ data for CG13894: 39 pix of staining in 25 body parts.
BioGrid reports that CG13894 interacts with CG2009 .
TRiP has 1 RNAi stocks for FBgn0035157 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035157 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain56 ± 14 of 4 4.00Up
Head25 ± 34 of 4 1.80Up
Eye38 ± 24 of 4 2.72Up
Thoracicoabdominal ganglion86 ± 34 of 4 6.10Up
Salivary gland14 ± 50 of 4 0.99None
Crop7 ± 20 of 4 0.50None
Midgut17 ± 11 of 4 1.20None
Tubule5 ± 00 of 4 0.40Down
Hindgut7 ± 10 of 4 0.50Down
Heart1 ± 00 of 4 0.11Down
Fat body4 ± 20 of 4 0.30Down
Ovary5 ± 10 of 4 0.40Down
Testis3 ± 10 of 4 0.20Down
Male accessory glands6 ± 30 of 4 0.40None
Virgin spermatheca4 ± 00 of 4 0.32Down
Mated spermatheca10 ± 31 of 4 0.77None
Adult carcass10 ± 30 of 4 0.70None
Larval CNS154 ± 104 of 410.89Up
Larval Salivary gland4 ± 20 of 4 0.33Down
Larval midgut21 ± 31 of 4 1.53None
Larval tubule8 ± 31 of 4 0.60None
Larval hindgut9 ± 41 of 4 0.66None
Larval fat body6 ± 20 of 4 0.50Down
Larval trachea2 ± 10 of 4 0.20Down
Larval carcass12 ± 10 of 4 0.90None
S2 cells (growing)7 ± 11 of 4 0.52Down
Whole fly14 ± 21 of 4

Looking for FBgn0035157. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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