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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035158 through 18771 annotations produced 1 hits



(CG13895):

Annotation Number : CG13895
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035158
Gbrowse : chr3L:705933-708201 (-) // 100.0 //
Probeset : 1629940_at
Accessions : protein= NP_612055;, nucleotide= NM_138211;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from electronic annotation"
FlyMine data for FBgn0035158.
VDRC has 2 RNAi stocks for FBgn0035158 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 34 of 4 2.40Up
Head44 24 of 4 1.30None
Eye56 34 of 4 1.73Up
Thoracicoabdominal ganglion58 14 of 4 1.80Up
Salivary gland24 31 of 4 0.75None
Crop65 34 of 4 2.00Up
Midgut35 42 of 4 1.10None
Tubule35 34 of 4 1.10None
Hindgut56 24 of 4 1.70Up
Heart37 34 of 4 1.13None
Fat body34 30 of 4 1.05None
Ovary46 24 of 4 1.40None
Testis9 02 of 4 0.30Down
Male accessory glands37 42 of 4 1.10None
Virgin spermatheca45 24 of 4 1.38None
Mated spermatheca45 24 of 4 1.39None
Adult carcass35 21 of 4 1.10None
Larval CNS115 174 of 4 3.51Up
Larval Salivary gland30 12 of 4 0.93None
Larval midgut30 20 of 4 0.93None
Larval tubule33 14 of 4 1.00None
Larval hindgut74 64 of 4 2.26Up
Larval fat body39 23 of 4 1.20None
Larval trachea94 74 of 4 2.89Up
Larval carcass55 34 of 4 1.69Up
S2 cells (growing)141 44 of 4 4.30Up
Whole fly32 42 of 4

Looking for FBgn0035158. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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