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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035159 through 18771 annotations produced 1 hits



(CG13896):

Annotation Number : CG13896
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035159
Gbrowse : chr3L:710941-711574 (-) // 100.0 //
Probeset : 1625505_at
Accessions : protein= NP_001137867; /// NP_612056;, nucleotide= NM_001144395; /// NM_138212;
FlyMine data for FBgn0035159.
BioGrid reports that CG13896 interacts with CG1464 .
VDRC has 3 RNAi stocks for FBgn0035159 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 14 of 4 0.80None
Head18 42 of 4 0.70None
Eye11 13 of 4 0.41Down
Thoracicoabdominal ganglion30 24 of 4 1.10None
Salivary gland18 50 of 4 0.68None
Crop23 23 of 4 0.90None
Midgut18 10 of 4 0.70None
Tubule19 21 of 4 0.70Down
Hindgut14 21 of 4 0.50Down
Heart12 04 of 4 0.45Down
Fat body7 50 of 4 0.29Down
Ovary44 14 of 4 1.60Up
Testis43 24 of 4 1.60Up
Male accessory glands7 30 of 4 0.30Down
Virgin spermatheca11 00 of 4 0.42Down
Mated spermatheca5 10 of 4 0.18Down
Adult carcass13 30 of 4 0.50Down
Larval CNS56 44 of 4 2.06Up
Larval Salivary gland19 01 of 4 0.72None
Larval midgut14 10 of 4 0.55Down
Larval tubule30 24 of 4 1.10None
Larval hindgut20 12 of 4 0.75None
Larval fat body33 21 of 4 1.20None
Larval trachea43 64 of 4 1.60Up
Larval carcass19 50 of 4 0.73None
S2 cells (growing)76 44 of 4 2.82Up
Whole fly27 34 of 4

Looking for FBgn0035159. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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