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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035164 through 18771 annotations produced 1 hits



(CG13901):

Annotation Number : CG13901
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035164
Gbrowse : chr3L:836666-837514 (-) // 100.0 //
Probeset : 1635239_at
Accessions : protein= NP_612061;, nucleotide= NM_138217;
FlyMine data for FBgn0035164.
VDRC has 2 RNAi stocks for FBgn0035164 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 14 of 4 0.70Down
Head50 34 of 4 0.40Down
Eye73 14 of 4 0.65Down
Thoracicoabdominal ganglion90 44 of 4 0.80None
Salivary gland31 41 of 4 0.28Down
Crop56 44 of 4 0.50Down
Midgut44 34 of 4 0.40Down
Tubule54 42 of 4 0.50Down
Hindgut58 24 of 4 0.50Down
Heart34 24 of 4 0.31Down
Fat body26 40 of 4 0.23Down
Ovary114 24 of 4 1.00None
Testis379 54 of 4 3.40Up
Male accessory glands70 64 of 4 0.60Down
Virgin spermatheca25 14 of 4 0.23Down
Mated spermatheca35 24 of 4 0.31Down
Adult carcass29 20 of 4 0.30Down
Larval CNS112 104 of 4 1.00None
Larval Salivary gland55 44 of 4 0.49Down
Larval midgut25 22 of 4 0.22Down
Larval tubule36 24 of 4 0.30Down
Larval hindgut42 34 of 4 0.37Down
Larval fat body48 132 of 4 0.40Down
Larval trachea82 124 of 4 0.73Down
Larval carcass54 34 of 4 0.48Down
S2 cells (growing)124 44 of 4 1.11None
Whole fly113 94 of 4

Looking for FBgn0035164. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime