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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035169 through 18771 annotations produced 1 hits



(CG13890):

Annotation Number : CG13890
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035169
Gbrowse : chr3L:851318-852673 (+) // 100.0 //
Probeset : 1629606_at
Accessions : protein= NP_612065;, nucleotide= NM_138221;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004165 // dodecenoyl-CoA delta-isomerase activ
FlyMine data for FBgn0035169.
BDGP gene expression has embryonic in situ data for CG13890: 9 pix of staining in 3 body parts.
BioGrid reports that CG13890 interacts with CG14815 .
VDRC has 2 RNAi stocks for FBgn0035169 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain156 ± 34 of 4 0.90None
Head134 ± 64 of 4 0.70Down
Eye88 ± 54 of 4 0.50Down
Thoracicoabdominal ganglion184 ± 64 of 4 1.00None
Salivary gland93 ± 104 of 4 0.52Down
Crop145 ± 74 of 4 0.80None
Midgut140 ± 74 of 4 0.80None
Tubule141 ± 54 of 4 0.80Down
Hindgut96 ± 44 of 4 0.50Down
Heart152 ± 84 of 4 0.85None
Fat body301 ± 334 of 4 1.68Up
Ovary406 ± 124 of 4 2.30Up
Testis101 ± 44 of 4 0.60Down
Male accessory glands158 ± 94 of 4 0.90None
Virgin spermatheca200 ± 174 of 4 1.12None
Mated spermatheca197 ± 244 of 4 1.10None
Adult carcass122 ± 54 of 4 0.70Down
Larval CNS280 ± 234 of 4 1.57Up
Larval Salivary gland117 ± 94 of 4 0.65Down
Larval midgut183 ± 24 of 4 1.02None
Larval tubule372 ± 184 of 4 2.10Up
Larval hindgut134 ± 54 of 4 0.75Down
Larval fat body1505 ± 1524 of 4 8.40Up
Larval trachea148 ± 224 of 4 0.83None
Larval carcass77 ± 44 of 4 0.43Down
S2 cells (growing)274 ± 34 of 4 1.53Up
Whole fly179 ± 134 of 4

Looking for FBgn0035169. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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