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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035186 through 18771 annotations produced 1 hits



(CG13912):

Annotation Number : CG13912
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035186
Gbrowse : chr3L:1189589-1190360 (+) // 100.0 //
Probeset : 1623126_at
Accessions : protein= NP_612079;, nucleotide= NM_138235;
FlyMine data for FBgn0035186.
BDGP gene expression has embryonic in situ data for CG13912: 15 pix of staining in 26 body parts.
VDRC has 4 RNAi stocks for FBgn0035186 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 11 of 4 0.10Down
Head217 ± 134 of 4 2.60Up
Eye133 ± 254 of 4 1.62None
Thoracicoabdominal ganglion13 ± 11 of 4 0.20Down
Salivary gland6 ± 20 of 4 0.07Down
Crop37 ± 14 of 4 0.40Down
Midgut118 ± 74 of 4 1.40Up
Tubule63 ± 74 of 4 0.80Down
Hindgut39 ± 24 of 4 0.50Down
Heart605 ± 294 of 4 7.34Up
Fat body1182 ± 664 of 414.33Up
Ovary15 ± 10 of 4 0.20Down
Testis3 ± 00 of 4 0.00Down
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca608 ± 204 of 4 7.37Up
Mated spermatheca903 ± 414 of 410.95Up
Adult carcass410 ± 224 of 4 5.00Up
Larval CNS1 ± 00 of 4 0.02Down
Larval Salivary gland11 ± 40 of 4 0.14Down
Larval midgut42 ± 84 of 4 0.51Down
Larval tubule15 ± 43 of 4 0.20Down
Larval hindgut21 ± 22 of 4 0.26Down
Larval fat body482 ± 384 of 4 5.80Up
Larval trachea11 ± 72 of 4 0.13Down
Larval carcass8 ± 10 of 4 0.11Down
S2 cells (growing)4 ± 10 of 4 0.06Down
Whole fly82 ± 74 of 4

Looking for FBgn0035186. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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