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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035193 through 18771 annotations produced 1 hits



(CG9192):

Annotation Number : CG9192
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035193
Gbrowse : chr3L:1237131-1238313 (-) // 100.0 //
Probeset : 1640057_at
Accessions : protein= NP_612085;, nucleotide= NM_138241;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035193.
BDGP gene expression has embryonic in situ data for CG9192: 5 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0035193 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.20Down
Head21 ± 24 of 4 1.00None
Eye11 ± 22 of 4 0.56None
Thoracicoabdominal ganglion7 ± 10 of 4 0.40Down
Salivary gland8 ± 20 of 4 0.38Down
Crop201 ± 194 of 4 9.60Up
Midgut4 ± 10 of 4 0.20Down
Tubule19 ± 31 of 4 0.90None
Hindgut45 ± 44 of 4 2.10Up
Heart4 ± 11 of 4 0.21Down
Fat body11 ± 12 of 4 0.55None
Ovary5 ± 00 of 4 0.20Down
Testis5 ± 00 of 4 0.20Down
Male accessory glands10 ± 20 of 4 0.50None
Virgin spermatheca7 ± 10 of 4 0.36Down
Mated spermatheca8 ± 10 of 4 0.41None
Adult carcass70 ± 34 of 4 3.30Up
Larval CNS7 ± 31 of 4 0.36Down
Larval Salivary gland30 ± 14 of 4 1.46None
Larval midgut41 ± 43 of 4 1.95Up
Larval tubule1031 ± 734 of 449.00Up
Larval hindgut31 ± 14 of 4 1.51None
Larval fat body4 ± 20 of 4 0.20Down
Larval trachea50 ± 224 of 4 2.38None
Larval carcass16 ± 20 of 4 0.79None
S2 cells (growing)4 ± 10 of 4 0.20Down
Whole fly21 ± 44 of 4

Looking for FBgn0035193. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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