FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035194 through 18771 annotations produced 1 hits

Psf1 (Psf1):

Annotation Number : CG9187
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035194
Gbrowse : chr3L:1247065-1247674 (-) // 100.0 //
Probeset : 1629713_at
Accessions : protein= NP_612086;, nucleotide= NM_138242;
Pathway : 0000811 // GINS complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0043138 // 3'-5' DNA helicase activity // inferred
FlyMine data for FBgn0035194.
VDRC has 3 RNAi stocks for FBgn0035194 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	0.10	Down
Head	13 ± 2	0 of 4	0.30	Down
Eye	8 ± 2	2 of 4	0.22	Down
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.10	Down
Salivary gland	19 ± 2	0 of 4	0.49	Down
Crop	24 ± 2	2 of 4	0.60	Down
Midgut	15 ± 2	0 of 4	0.40	Down
Tubule	13 ± 1	0 of 4	0.30	Down
Hindgut	20 ± 2	0 of 4	0.50	Down
Heart	17 ± 2	4 of 4	0.44	Down
Fat body	14 ± 3	1 of 4	0.36	Down
Ovary	80 ± 1	4 of 4	2.00	Up
Testis	29 ± 2	4 of 4	0.70	None
Male accessory glands	12 ± 2	0 of 4	0.30	Down
Virgin spermatheca	8 ± 2	0 of 4	0.22	Down
Mated spermatheca	9 ± 1	0 of 4	0.23	Down
Adult carcass	12 ± 2	1 of 4	0.30	Down
Larval CNS	36 ± 5	4 of 4	0.91	None
Larval Salivary gland	36 ± 1	4 of 4	0.90	None
Larval midgut	7 ± 2	0 of 4	0.19	Down
Larval tubule	22 ± 3	0 of 4	0.60	Down
Larval hindgut	15 ± 1	2 of 4	0.40	Down
Larval fat body	10 ± 2	0 of 4	0.30	Down
Larval trachea	42 ± 5	4 of 4	1.06	None
Larval carcass	19 ± 3	3 of 4	0.48	Down
S2 cells (growing)	62 ± 1	4 of 4	1.56	Up
Whole fly	39 ± 5	4 of 4

Looking for FBgn0035194. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720