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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035198 through 18771 annotations produced 2 hits



/// (CG9130 /// CG9133):

Annotation Number : CG32332
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035197 /// FBgn0035198
Gbrowse : chr3L:1252011-1255988 (+) // 100.0 //
Probeset : 1632587_s_at
Accessions : protein= NP_001027092; /// NP_001027093; /// NP_001027094; /// NP_001027095; /// NP_001027096;, nucleotide= NM_001031921; /// NM_001031922; /// NM_001031923; /// NM_001031924; /// NM_001031925;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035197 /// FBgn0035198.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland10 ± 30 of 4 0.02Down
Crop1 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body1 ± 20 of 4 0.00Down
Ovary0 ± 00 of 4 0.00Down
Testis3769 ± 1584 of 4 6.30Up
Male accessory glands0 ± 00 of 4 0.00Down
Virgin spermatheca5 ± 10 of 4 0.01Down
Mated spermatheca10 ± 31 of 4 0.02Down
Adult carcass9 ± 30 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.00Down
Larval Salivary gland2 ± 10 of 4 0.00Down
Larval midgut2 ± 10 of 4 0.00Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.00Down
Larval fat body588 ± 3334 of 4 1.00None
Larval trachea18 ± 281 of 4 0.03Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly601 ± 744 of 4



/// (CG17327 /// CG9133):

Annotation Number : CG17327
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038107
Gbrowse : chr3R:8822589-8823404 (-) // 100.0 //
Probeset : 1636305_a_at
Accessions : protein= NP_650249; /// NP_731760;, nucleotide= NM_141992; /// NM_169488;
Interpro : 0004045 // aminoacyl-tRNA hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0038107.
BioGrid reports that CG17327 interacts with CG3880 CG4853 .
VDRC has 1 RNAi stocks for FBgn0038107 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain286 ± 24 of 4 1.50Up
Head200 ± 104 of 4 1.00None
Eye249 ± 154 of 4 1.27Up
Thoracicoabdominal ganglion361 ± 164 of 4 1.80Up
Salivary gland119 ± 24 of 4 0.61Down
Crop223 ± 74 of 4 1.10Up
Midgut127 ± 74 of 4 0.60Down
Tubule322 ± 54 of 4 1.60Up
Hindgut220 ± 54 of 4 1.10Up
Heart165 ± 54 of 4 0.84Down
Fat body145 ± 254 of 4 0.74Down
Ovary272 ± 104 of 4 1.40Up
Testis140 ± 74 of 4 0.70Down
Male accessory glands110 ± 84 of 4 0.60Down
Virgin spermatheca182 ± 104 of 4 0.93None
Mated spermatheca199 ± 64 of 4 1.01None
Adult carcass180 ± 54 of 4 0.90None
Larval CNS276 ± 164 of 4 1.40Up
Larval Salivary gland132 ± 34 of 4 0.67Down
Larval midgut109 ± 64 of 4 0.55Down
Larval tubule137 ± 74 of 4 0.70Down
Larval hindgut212 ± 124 of 4 1.08None
Larval fat body101 ± 54 of 4 0.50Down
Larval trachea228 ± 184 of 4 1.16Up
Larval carcass194 ± 234 of 4 0.99None
S2 cells (growing)504 ± 74 of 4 2.56Up
Whole fly197 ± 74 of 4

Looking for FBgn0035198. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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