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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035204 through 18771 annotations produced 1 hits



(CG2277):

Annotation Number : CG2277
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035204
Gbrowse : chr3L:1305274-1307417 (-) // 100.0 //
Probeset : 1629033_at
Accessions : protein= NP_612095;, nucleotide= NM_138251;
FlyMine data for FBgn0035204.
BDGP gene expression has embryonic in situ data for CG2277: 12 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035204 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain561 ± 104 of 4 2.00Up
Head229 ± 374 of 4 0.80None
Eye212 ± 304 of 4 0.77None
Thoracicoabdominal ganglion687 ± 234 of 4 2.50Up
Salivary gland185 ± 54 of 4 0.67Down
Crop268 ± 94 of 4 1.00None
Midgut284 ± 54 of 4 1.00None
Tubule578 ± 484 of 4 2.10Up
Hindgut167 ± 24 of 4 0.60Down
Heart269 ± 154 of 4 0.98None
Fat body235 ± 254 of 4 0.86Down
Ovary279 ± 44 of 4 1.00None
Testis520 ± 234 of 4 1.90Up
Male accessory glands57 ± 54 of 4 0.20Down
Virgin spermatheca275 ± 54 of 4 1.00None
Mated spermatheca264 ± 254 of 4 0.96None
Adult carcass226 ± 94 of 4 0.80Down
Larval CNS186 ± 184 of 4 0.68Down
Larval Salivary gland86 ± 74 of 4 0.31Down
Larval midgut182 ± 134 of 4 0.66Down
Larval tubule57 ± 54 of 4 0.20Down
Larval hindgut105 ± 54 of 4 0.38Down
Larval fat body2053 ± 2314 of 4 7.50Up
Larval trachea64 ± 34 of 4 0.23Down
Larval carcass120 ± 174 of 4 0.44Down
S2 cells (growing)141 ± 34 of 4 0.51Down
Whole fly275 ± 54 of 4

Looking for FBgn0035204. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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