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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035207 through 18771 annotations produced 1 hits



(CG9153):

Annotation Number : CG9153
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035207
Gbrowse : chr3L:1313677-1318328 (+) // 100.0 //
Probeset : 1633186_s_at
Accessions : protein= NP_612098; /// NP_728591;, nucleotide= NM_138254; /// NM_167868;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0035207.
BDGP gene expression has embryonic in situ data for CG9153: 4 pix of staining in 1 body parts.
Homophila reports that CG9153 is a close match (2e-15) to human gene ALS2;ALSJ;IAHSP;PLSJ (NP_065970), a gene associated with Amyotrophic lateral sclerosis, juvenile, 205100 (3);Primary lateral sclerosis, juvenile, 606353 (3);Spastic paralysis, infantile onset ascending, 607225 (3).
VDRC has 3 RNAi stocks for FBgn0035207 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain311 94 of 4 3.90Up
Head133 74 of 4 1.70Up
Eye218 124 of 4 2.73Up
Thoracicoabdominal ganglion213 54 of 4 2.70Up
Salivary gland69 34 of 4 0.87None
Crop78 14 of 4 1.00None
Midgut85 114 of 4 1.10None
Tubule128 54 of 4 1.60Up
Hindgut73 34 of 4 0.90None
Heart117 64 of 4 1.47Up
Fat body120 84 of 4 1.50Up
Ovary107 24 of 4 1.30Up
Testis170 174 of 4 2.10Up
Male accessory glands65 54 of 4 0.80None
Virgin spermatheca54 44 of 4 0.68Down
Mated spermatheca51 24 of 4 0.64Down
Adult carcass81 94 of 4 1.00None
Larval CNS113 124 of 4 1.41Up
Larval Salivary gland103 24 of 4 1.29Up
Larval midgut87 84 of 4 1.08None
Larval tubule125 54 of 4 1.60Up
Larval hindgut68 44 of 4 0.85None
Larval fat body66 64 of 4 0.80None
Larval trachea71 104 of 4 0.89None
Larval carcass130 54 of 4 1.63Up
S2 cells (growing)144 124 of 4 1.80Up
Whole fly80 74 of 4

Looking for FBgn0035207. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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