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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035213 through 18771 annotations produced 1 hits



(CG2199):

Annotation Number : CG2199
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035213
Gbrowse : chr3L:1339456-1342403 (-) // 100.0 //
Probeset : 1633717_a_at
Accessions : protein= NP_612104; /// NP_728599;, nucleotide= NM_138260; /// NM_167873;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0035213.
BDGP gene expression has embryonic in situ data for CG2199: 16 pix of staining in 14 body parts.
BioGrid reports that CG2199 interacts with CG5953 CG6354 CG8053 CG8411 CG2257 CG2275 CG31136 CG31211 CG3143 CG31666 CG32071 CG3294 CG3517 CG3689 CG3918 CG4220 CG4463 CG5064 CG5442 CG5683 CG6203 CG6664 CG6838 CG6951 CG7269 CG7757 CG7974 CG8269 CG8505 CG8597 CG8995 CG9437 CG9641 CG9740 CG9911 CG9968 .
TRiP has 1 RNAi stocks for FBgn0035213 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035213 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain60 34 of 4 0.30Down
Head55 54 of 4 0.30Down
Eye40 14 of 4 0.20Down
Thoracicoabdominal ganglion42 54 of 4 0.20Down
Salivary gland56 44 of 4 0.28Down
Crop43 24 of 4 0.20Down
Midgut68 44 of 4 0.30Down
Tubule43 24 of 4 0.20Down
Hindgut49 34 of 4 0.20Down
Heart35 24 of 4 0.18Down
Fat body65 54 of 4 0.33Down
Ovary480 144 of 4 2.40Up
Testis23 14 of 4 0.10Down
Male accessory glands116 34 of 4 0.60Down
Virgin spermatheca39 44 of 4 0.19Down
Mated spermatheca57 44 of 4 0.28Down
Adult carcass52 54 of 4 0.30Down
Larval CNS153 94 of 4 0.76None
Larval Salivary gland66 54 of 4 0.33Down
Larval midgut42 44 of 4 0.21Down
Larval tubule35 14 of 4 0.20Down
Larval hindgut61 74 of 4 0.30Down
Larval fat body32 44 of 4 0.20Down
Larval trachea84 94 of 4 0.42Down
Larval carcass55 114 of 4 0.27Down
S2 cells (growing)213 34 of 4 1.06None
Whole fly201 194 of 4

Looking for FBgn0035213. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime