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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035227 through 18771 annotations produced 1 hits



/// CG33971 (CG12090 /// Ir62a):

Annotation Number : CG12090
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035227
Gbrowse : chr3L:1523411-1534034 (-) // 100.0 //
Probeset : 1635165_a_at
Accessions : protein= NP_647618; /// NP_728620; /// NP_728621;, nucleotide= NM_139361; /// NM_167888; /// NM_167889;
FlyMine data for FBgn0035227.
VDRC has 2 RNAi stocks for FBgn0035227 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain184 74 of 4 3.80Up
Head74 24 of 4 1.50Up
Eye86 44 of 4 1.80Up
Thoracicoabdominal ganglion194 64 of 4 4.00Up
Salivary gland126 82 of 4 2.63Up
Crop65 24 of 4 1.40Up
Midgut63 24 of 4 1.30Up
Tubule87 84 of 4 1.80Up
Hindgut88 34 of 4 1.80Up
Heart60 24 of 4 1.26None
Fat body104 84 of 4 2.17Up
Ovary65 34 of 4 1.40Up
Testis19 04 of 4 0.40Down
Male accessory glands126 154 of 4 2.60Up
Virgin spermatheca114 34 of 4 2.38Up
Mated spermatheca111 44 of 4 2.31Up
Adult carcass97 44 of 4 2.00Up
Larval CNS109 64 of 4 2.27Up
Larval Salivary gland85 64 of 4 1.77Up
Larval midgut55 23 of 4 1.16None
Larval tubule68 24 of 4 1.40Up
Larval hindgut59 34 of 4 1.24None
Larval fat body58 64 of 4 1.20None
Larval trachea70 94 of 4 1.47Up
Larval carcass47 30 of 4 0.98None
S2 cells (growing)64 14 of 4 1.35Up
Whole fly48 44 of 4

Looking for FBgn0035227. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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