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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035232 through 18771 annotations produced 1 hits



(CG12099):

Annotation Number : CG12099
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035232
Gbrowse : chr3L:1555362-1558454 (-) // 100.0 //
Probeset : 1630274_s_at
Accessions : protein= NP_647623; /// NP_728629;, nucleotide= NM_139366; /// NM_167895;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0035232.
BDGP gene expression has embryonic in situ data for CG12099: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035232 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain247 64 of 4 1.90Up
Head186 54 of 4 1.50Up
Eye224 94 of 4 1.77Up
Thoracicoabdominal ganglion184 34 of 4 1.40Up
Salivary gland321 154 of 4 2.53Up
Crop275 64 of 4 2.20Up
Midgut88 64 of 4 0.70Down
Tubule313 114 of 4 2.50Up
Hindgut219 34 of 4 1.70Up
Heart251 94 of 4 1.98Up
Fat body217 204 of 4 1.71Up
Ovary69 54 of 4 0.50Down
Testis218 14 of 4 1.70Up
Male accessory glands131 84 of 4 1.00None
Virgin spermatheca187 54 of 4 1.48Up
Mated spermatheca169 84 of 4 1.34Up
Adult carcass242 114 of 4 1.90Up
Larval CNS201 144 of 4 1.59Up
Larval Salivary gland116 24 of 4 0.92None
Larval midgut79 74 of 4 0.62Down
Larval tubule288 44 of 4 2.30Up
Larval hindgut227 144 of 4 1.79Up
Larval fat body156 44 of 4 1.20Up
Larval trachea179 124 of 4 1.41Up
Larval carcass153 184 of 4 1.21None
S2 cells (growing)294 74 of 4 2.31Up
Whole fly127 54 of 4

Looking for FBgn0035232. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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