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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035236 through 18771 annotations produced 2 hits



anon-fast-evolving-3A8 (CG12004):

Annotation Number : S.C3L000206
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035236
Gbrowse : chr3L:1574987-1575271 (+) // 100.0 //
Probeset : 1629808_at
Accessions : protein= NP_001097474; /// NP_647627; /// NP_728633;, nucleotide= NM_001104004; /// NM_139370; /// NM_167897;
FlyMine data for FBgn0035236.
BDGP gene expression has embryonic in situ data for CG12004: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035236 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain270 124 of 410.10Up
Head68 94 of 4 2.50Up
Eye24 24 of 4 0.90None
Thoracicoabdominal ganglion216 144 of 4 8.10Up
Salivary gland25 60 of 4 0.94None
Crop28 24 of 4 1.10None
Midgut32 10 of 4 1.20None
Tubule13 11 of 4 0.50Down
Hindgut28 24 of 4 1.00None
Heart57 34 of 4 2.14Up
Fat body46 64 of 4 1.73Up
Ovary14 13 of 4 0.50Down
Testis9 20 of 4 0.30Down
Male accessory glands24 31 of 4 0.90None
Virgin spermatheca17 32 of 4 0.66None
Mated spermatheca20 14 of 4 0.76None
Adult carcass42 32 of 4 1.60Up
Larval CNS61 64 of 4 2.27Up
Larval Salivary gland15 21 of 4 0.58Down
Larval midgut38 20 of 4 1.44Up
Larval tubule36 04 of 4 1.40Up
Larval hindgut32 34 of 4 1.19None
Larval fat body51 24 of 4 1.90Up
Larval trachea15 44 of 4 0.59Down
Larval carcass41 24 of 4 1.55Up
S2 cells (growing)15 12 of 4 0.56Down
Whole fly26 20 of 4



anon-fast-evolving-3A8 (CG12004):

Annotation Number : CG12004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035236
Gbrowse : chr3L:1569183-1574736 (+) // 100.0 //
Probeset : 1632844_s_at
Accessions : protein= NP_001097474; /// NP_647627; /// NP_728633;, nucleotide= NM_001104004; /// NM_139370; /// NM_167897;
FlyMine data for FBgn0035236.
BDGP gene expression has embryonic in situ data for CG12004: 4 pix of staining in 1 body parts.
BioGrid reports that CG12004 interacts with CG17568 .
VDRC has 2 RNAi stocks for FBgn0035236 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 34 of 4 0.20Down
Head226 44 of 4 0.80None
Eye276 34 of 4 0.98None
Thoracicoabdominal ganglion43 04 of 4 0.20Down
Salivary gland455 104 of 4 1.62Up
Crop341 74 of 4 1.20Up
Midgut776 184 of 4 2.80Up
Tubule729 144 of 4 2.60Up
Hindgut397 74 of 4 1.40Up
Heart102 154 of 4 0.36Down
Fat body100 144 of 4 0.35Down
Ovary550 124 of 4 2.00Up
Testis377 174 of 4 1.30Up
Male accessory glands283 64 of 4 1.00None
Virgin spermatheca290 164 of 4 1.03None
Mated spermatheca337 364 of 4 1.20None
Adult carcass159 64 of 4 0.60Down
Larval CNS117 34 of 4 0.42Down
Larval Salivary gland370 64 of 4 1.32Up
Larval midgut928 124 of 4 3.30Up
Larval tubule1458 374 of 4 5.20Up
Larval hindgut745 394 of 4 2.65Up
Larval fat body389 184 of 4 1.40Up
Larval trachea321 54 of 4 1.14None
Larval carcass570 464 of 4 2.03Up
S2 cells (growing)558 174 of 4 1.98Up
Whole fly281 184 of 4

Looking for FBgn0035236. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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