FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035237 through 18771 annotations produced 2 hits

(CG13917):

Annotation Number : CG13917
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035237
Gbrowse : chr3L:1593261-1599875 (+) // 100.0 //
Probeset : 1627984_at
Accessions : protein= NP_647628;, nucleotide= NM_139371;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0035237.
VDRC has 1 RNAi stocks for FBgn0035237 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	233 ± 5	4 of 4	7.20	Up
Head	62 ± 3	4 of 4	1.90	Up
Eye	248 ± 20	4 of 4	7.70	Up
Thoracicoabdominal ganglion	212 ± 9	4 of 4	6.60	Up
Salivary gland	17 ± 1	0 of 4	0.54	Down
Crop	64 ± 5	4 of 4	2.00	Up
Midgut	15 ± 3	0 of 4	0.50	Down
Tubule	6 ± 0	0 of 4	0.20	Down
Hindgut	33 ± 1	0 of 4	1.00	None
Heart	45 ± 1	4 of 4	1.41	Up
Fat body	17 ± 8	0 of 4	0.55	Down
Ovary	44 ± 2	4 of 4	1.40	Up
Testis	24 ± 1	0 of 4	0.70	Down
Male accessory glands	18 ± 4	0 of 4	0.60	Down
Virgin spermatheca	24 ± 3	0 of 4	0.77	None
Mated spermatheca	29 ± 3	0 of 4	0.90	None
Adult carcass	54 ± 8	1 of 4	1.70	None
Larval CNS	85 ± 9	4 of 4	2.65	Up
Larval Salivary gland	13 ± 5	0 of 4	0.43	Down
Larval midgut	10 ± 2	0 of 4	0.32	Down
Larval tubule	2 ± 0	0 of 4	0.10	Down
Larval hindgut	31 ± 3	0 of 4	0.98	None
Larval fat body	8 ± 2	0 of 4	0.20	Down
Larval trachea	87 ± 16	4 of 4	2.70	Up
Larval carcass	8 ± 2	0 of 4	0.27	Down
S2 cells (growing)	24 ± 2	0 of 4	0.75	None
Whole fly	32 ± 2	0 of 4

():

Annotation Number : S.C3L000207
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035237
Gbrowse : chr3L:1588111-1592878 (+) // 90.79 //
Probeset : 1638625_at
Accessions : protein= , nucleotide=
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0035237.
VDRC has 1 RNAi stocks for FBgn0035237 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	40 ± 5	4 of 4	3.50	Up
Head	15 ± 4	3 of 4	1.30	None
Eye	8 ± 1	2 of 4	0.74	None
Thoracicoabdominal ganglion	21 ± 2	4 of 4	1.80	Up
Salivary gland	18 ± 3	2 of 4	1.63	None
Crop	16 ± 3	2 of 4	1.40	None
Midgut	10 ± 1	0 of 4	0.90	None
Tubule	7 ± 1	1 of 4	0.60	Down
Hindgut	21 ± 2	4 of 4	1.90	Up
Heart	9 ± 1	3 of 4	0.79	None
Fat body	12 ± 4	3 of 4	1.07	None
Ovary	18 ± 1	4 of 4	1.60	Up
Testis	6 ± 0	1 of 4	0.50	Down
Male accessory glands	9 ± 2	0 of 4	0.80	None
Virgin spermatheca	9 ± 0	2 of 4	0.84	None
Mated spermatheca	10 ± 2	0 of 4	0.87	None
Adult carcass	5 ± 2	0 of 4	0.50	None
Larval CNS	12 ± 3	4 of 4	1.05	None
Larval Salivary gland	8 ± 2	0 of 4	0.71	None
Larval midgut	4 ± 1	0 of 4	0.38	Down
Larval tubule	5 ± 1	0 of 4	0.50	Down
Larval hindgut	11 ± 3	4 of 4	1.00	None
Larval fat body	10 ± 1	3 of 4	0.90	None
Larval trachea	9 ± 1	3 of 4	0.81	None
Larval carcass	10 ± 0	2 of 4	0.91	None
S2 cells (growing)	5 ± 0	2 of 4	0.44	Down
Whole fly	11 ± 1	4 of 4

Looking for FBgn0035237. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720