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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035238 through 18771 annotations produced 1 hits



(CG12104):

Annotation Number : CG12104
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035238
Gbrowse : chr3L:1600940-1602718 (-) // 100.0 //
Probeset : 1626199_at
Accessions : protein= NP_647629;, nucleotide= NM_139372;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0035238.
BDGP gene expression has embryonic in situ data for CG12104: 15 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0035238 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 44 of 4 0.70Down
Head77 24 of 4 0.60Down
Eye69 54 of 4 0.53Down
Thoracicoabdominal ganglion60 54 of 4 0.50Down
Salivary gland67 84 of 4 0.51Down
Crop66 54 of 4 0.50Down
Midgut60 84 of 4 0.50Down
Tubule54 14 of 4 0.40Down
Hindgut68 34 of 4 0.50Down
Heart78 54 of 4 0.60Down
Fat body97 204 of 4 0.74Down
Ovary225 64 of 4 1.70Up
Testis570 164 of 4 4.30Up
Male accessory glands92 34 of 4 0.70Down
Virgin spermatheca74 54 of 4 0.57Down
Mated spermatheca63 44 of 4 0.48Down
Adult carcass64 54 of 4 0.50Down
Larval CNS102 24 of 4 0.78Down
Larval Salivary gland91 44 of 4 0.69Down
Larval midgut44 54 of 4 0.34Down
Larval tubule76 14 of 4 0.60Down
Larval hindgut45 24 of 4 0.34Down
Larval fat body208 284 of 4 1.60None
Larval trachea71 84 of 4 0.54Down
Larval carcass56 44 of 4 0.43Down
S2 cells (growing)219 44 of 4 1.67Up
Whole fly131 84 of 4

Looking for FBgn0035238. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime