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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035239 through 18771 annotations produced 1 hits



/// (CG18170 /// CG33791):

Annotation Number : CG32316
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035239 /// FBgn0035240
Gbrowse : chr3L:1602953-1617356 (+) // 100.0 //
Probeset : 1640732_s_at
Accessions : protein= NP_001027097; /// NP_001027098; /// NP_001027099; /// NP_001027100; /// NP_001027101; /// NP_001027102; /// NP_001163321; /// NP_001163322;, nucleotide= NM_001031926; /// NM_001031927; /// NM_001031928; /// NM_001031929; /// NM_001031930; /// NM_001031931; /// NM_001169850; /// NM_001169851;
Pathway : 0009353 // mitochondrial oxoglutarate dehydrogenase complex // inferred from sequence or structural similarity
Interpro : "0004591 // oxoglutarate dehydrogenase (succinyl-transferring) activity // inferred from sequence or structural similari
FlyMine data for FBgn0035239 /// FBgn0035240.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 11 of 4 0.00Down
Head6 10 of 4 0.00Down
Eye2 10 of 4 0.02Down
Thoracicoabdominal ganglion4 10 of 4 0.00Down
Salivary gland10 20 of 4 0.07Down
Crop5 10 of 4 0.00Down
Midgut3 10 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut2 10 of 4 0.00Down
Heart3 00 of 4 0.02Down
Fat body7 30 of 4 0.05Down
Ovary3 10 of 4 0.00Down
Testis1640 434 of 410.50Up
Male accessory glands6 10 of 4 0.00Down
Virgin spermatheca12 30 of 4 0.08Down
Mated spermatheca6 20 of 4 0.04Down
Adult carcass22 42 of 4 0.10Down
Larval CNS2 10 of 4 0.01Down
Larval Salivary gland2 00 of 4 0.02Down
Larval midgut5 20 of 4 0.04Down
Larval tubule6 10 of 4 0.00Down
Larval hindgut7 12 of 4 0.05Down
Larval fat body121 573 of 4 0.80None
Larval trachea9 91 of 4 0.06Down
Larval carcass28 44 of 4 0.18Down
S2 cells (growing)4 00 of 4 0.03Down
Whole fly157 144 of 4

Looking for FBgn0035239. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime