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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035243 through 18771 annotations produced 1 hits



(CG13926):

Annotation Number : CG13926
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035243
Gbrowse : chr3L:1617423-1618102 (-) // 100.0 //
Probeset : 1625905_at
Accessions : protein= NP_647633;, nucleotide= NM_139376;
FlyMine data for FBgn0035243.
BioGrid reports that CG13926 interacts with CG9163 .
VDRC has 2 RNAi stocks for FBgn0035243 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 54 of 4 0.70Down
Head43 24 of 4 0.70Down
Eye69 64 of 4 1.08None
Thoracicoabdominal ganglion51 64 of 4 0.80None
Salivary gland46 63 of 4 0.72None
Crop59 24 of 4 0.90None
Midgut76 34 of 4 1.20None
Tubule67 64 of 4 1.10None
Hindgut44 44 of 4 0.70Down
Heart82 34 of 4 1.28Up
Fat body47 34 of 4 0.74Down
Ovary126 54 of 4 2.00Up
Testis71 24 of 4 1.10None
Male accessory glands124 54 of 4 1.90Up
Virgin spermatheca23 24 of 4 0.36Down
Mated spermatheca30 34 of 4 0.48Down
Adult carcass42 34 of 4 0.70Down
Larval CNS121 44 of 4 1.89Up
Larval Salivary gland94 64 of 4 1.47Up
Larval midgut91 74 of 4 1.42Up
Larval tubule76 24 of 4 1.20None
Larval hindgut76 14 of 4 1.19None
Larval fat body68 84 of 4 1.10None
Larval trachea151 84 of 4 2.36Up
Larval carcass100 54 of 4 1.56Up
S2 cells (growing)87 34 of 4 1.36Up
Whole fly64 54 of 4

Looking for FBgn0035243. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime