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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035246 through 18771 annotations produced 1 hits



(CG13928):

Annotation Number : CG13928
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035246
Gbrowse : chr3L:1625790-1628377 (-) // 100.0 //
Probeset : 1637150_at
Accessions : protein= NP_647635;, nucleotide= NM_139378;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0035246.
BDGP gene expression has embryonic in situ data for CG13928: 14 pix of staining in 8 body parts.
BioGrid reports that CG13928 interacts with CG2079 CG2199 CG5576 CG7467 .
TRiP has 1 RNAi stocks for FBgn0035246 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035246 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1846 464 of 421.40Up
Head862 304 of 410.00Up
Eye2147 984 of 424.87Up
Thoracicoabdominal ganglion2105 254 of 424.40Up
Salivary gland4 20 of 4 0.06Down
Crop4 10 of 4 0.10Down
Midgut5 10 of 4 0.10Down
Tubule0 00 of 4 0.00Down
Hindgut3 10 of 4 0.00Down
Heart7 00 of 4 0.08Down
Fat body2 10 of 4 0.03Down
Ovary0 00 of 4 0.00Down
Testis27 14 of 4 0.30Down
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca0 00 of 4 0.01Down
Adult carcass41 24 of 4 0.50Down
Larval CNS1769 1164 of 420.50Up
Larval Salivary gland1 00 of 4 0.02Down
Larval midgut2 10 of 4 0.03Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.01Down
Larval fat body2 00 of 4 0.00Down
Larval trachea26 281 of 4 0.31Down
Larval carcass14 11 of 4 0.17Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly86 34 of 4

Looking for FBgn0035246. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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