FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035249 through 18771 annotations produced 1 hits

(CG17249):

Annotation Number : CG17249
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035249
Gbrowse : chr3L:1645929-1647464 (-) // 100.0 //
Probeset : 1634226_at
Accessions : protein= NP_647638;, nucleotide= NM_139381;
FlyMine data for FBgn0035249.
BDGP gene expression has embryonic in situ data for CG17249: 9 pix of staining in 3 body parts.
VDRC has 1 RNAi stocks for FBgn0035249 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	41 ± 2	4 of 4	1.50	Up
Head	23 ± 3	2 of 4	0.80	None
Eye	23 ± 1	4 of 4	0.85	None
Thoracicoabdominal ganglion	38 ± 3	3 of 4	1.40	None
Salivary gland	37 ± 2	0 of 4	1.32	Up
Crop	27 ± 2	2 of 4	1.00	None
Midgut	21 ± 5	0 of 4	0.70	None
Tubule	28 ± 3	3 of 4	1.00	None
Hindgut	27 ± 2	3 of 4	1.00	None
Heart	23 ± 2	4 of 4	0.83	None
Fat body	23 ± 7	1 of 4	0.82	None
Ovary	57 ± 0	4 of 4	2.00	Up
Testis	13 ± 1	0 of 4	0.50	Down
Male accessory glands	21 ± 5	0 of 4	0.80	None
Virgin spermatheca	25 ± 0	3 of 4	0.91	None
Mated spermatheca	20 ± 1	2 of 4	0.73	Down
Adult carcass	25 ± 3	1 of 4	0.90	None
Larval CNS	55 ± 2	4 of 4	1.98	Up
Larval Salivary gland	44 ± 7	4 of 4	1.56	None
Larval midgut	23 ± 5	0 of 4	0.83	None
Larval tubule	52 ± 3	4 of 4	1.90	Up
Larval hindgut	24 ± 2	4 of 4	0.85	None
Larval fat body	33 ± 2	3 of 4	1.20	None
Larval trachea	28 ± 3	4 of 4	0.99	None
Larval carcass	26 ± 2	4 of 4	0.92	None
S2 cells (growing)	32 ± 2	4 of 4	1.15	None
Whole fly	28 ± 2	3 of 4

Looking for FBgn0035249. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720