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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035253 through 18771 annotations produced 2 hits



anon-fast-evolving-1A7 (CG7971):

Annotation Number : CG7971
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035253
Gbrowse : chr3L:1654878-1665042 (-) // 100.0 //
Probeset : 1632271_a_at
Accessions : protein= NP_001027103; /// NP_001097475; /// NP_647642; /// NP_728652; /// NP_728653;, nucleotide= NM_001031932; /// NM_001104005; /// NM_139385; /// NM_167909; /// NM_167910;
Pathway : via spliceosome // inferred by curator /// 0008380 // RNA splicing // inferred from sequence or structural similarity"
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferre
FlyMine data for FBgn0035253.
VDRC has 1 RNAi stocks for FBgn0035253 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 14 of 4 0.20Down
Head120 94 of 4 0.30Down
Eye76 64 of 4 0.20Down
Thoracicoabdominal ganglion74 54 of 4 0.20Down
Salivary gland190 134 of 4 0.50Down
Crop228 44 of 4 0.60Down
Midgut241 104 of 4 0.60Down
Tubule166 34 of 4 0.40Down
Hindgut185 44 of 4 0.50Down
Heart113 44 of 4 0.30Down
Fat body244 394 of 4 0.65Down
Ovary949 134 of 4 2.50Up
Testis68 24 of 4 0.20Down
Male accessory glands415 114 of 4 1.10None
Virgin spermatheca261 194 of 4 0.69Down
Mated spermatheca311 94 of 4 0.83None
Adult carcass121 44 of 4 0.30Down
Larval CNS616 694 of 4 1.63Up
Larval Salivary gland354 244 of 4 0.94None
Larval midgut272 104 of 4 0.72Down
Larval tubule215 84 of 4 0.60Down
Larval hindgut354 64 of 4 0.94None
Larval fat body270 104 of 4 0.70Down
Larval trachea362 294 of 4 0.96None
Larval carcass362 334 of 4 0.96None
S2 cells (growing)364 144 of 4 0.97None
Whole fly377 274 of 4



anon-fast-evolving-1A7 (CG7971):

Annotation Number : CG7971
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035253
Gbrowse : chr3L:1654246-1665042 (-) // 99.9 //
Probeset : 1638022_at
Accessions : protein= NP_001027103; /// NP_001097475; /// NP_647642; /// NP_728652; /// NP_728653;, nucleotide= NM_001031932; /// NM_001104005; /// NM_139385; /// NM_167909; /// NM_167910;
Pathway : via spliceosome // inferred by curator /// 0008380 // RNA splicing // inferred from sequence or structural similarity"
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferre
FlyMine data for FBgn0035253.
VDRC has 1 RNAi stocks for FBgn0035253 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1722 414 of 415.60Up
Head437 204 of 4 4.00Up
Eye482 244 of 4 4.38Up
Thoracicoabdominal ganglion2029 284 of 418.40Up
Salivary gland106 64 of 4 0.97None
Crop67 34 of 4 0.60Down
Midgut117 84 of 4 1.10None
Tubule70 34 of 4 0.60Down
Hindgut62 24 of 4 0.60Down
Heart34 24 of 4 0.31Down
Fat body56 84 of 4 0.51Down
Ovary31 24 of 4 0.30Down
Testis23 04 of 4 0.20Down
Male accessory glands171 104 of 4 1.60Up
Virgin spermatheca93 94 of 4 0.85None
Mated spermatheca96 44 of 4 0.88None
Adult carcass97 94 of 4 0.90None
Larval CNS801 774 of 4 7.27Up
Larval Salivary gland76 84 of 4 0.70Down
Larval midgut39 34 of 4 0.36Down
Larval tubule45 44 of 4 0.40Down
Larval hindgut31 04 of 4 0.29Down
Larval fat body80 84 of 4 0.70Down
Larval trachea82 214 of 4 0.75None
Larval carcass51 24 of 4 0.47Down
S2 cells (growing)82 24 of 4 0.75Down
Whole fly110 94 of 4

Looking for FBgn0035253. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime