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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035254 through 18771 annotations produced 1 hits


Annotation Number : CG7974
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035254
Gbrowse : chr3L:1665142-1666392 (+) // 100.0 //
Probeset : 1625060_at
Accessions : protein= NP_647643;, nucleotide= NM_139386;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035254.
BDGP gene expression has embryonic in situ data for CG7974: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035254 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 24 of 4 1.20Up
Head39 44 of 4 0.90None
Eye34 24 of 4 0.75Down
Thoracicoabdominal ganglion44 14 of 4 1.00None
Salivary gland61 43 of 4 1.35Up
Crop43 04 of 4 1.00None
Midgut35 24 of 4 0.80Down
Tubule37 34 of 4 0.80Down
Hindgut35 24 of 4 0.80Down
Heart36 24 of 4 0.80Down
Fat body28 64 of 4 0.64Down
Ovary102 44 of 4 2.30Up
Testis131 54 of 4 2.90Up
Male accessory glands43 04 of 4 1.00None
Virgin spermatheca39 14 of 4 0.87None
Mated spermatheca42 34 of 4 0.93None
Adult carcass31 23 of 4 0.70Down
Larval CNS65 64 of 4 1.44Up
Larval Salivary gland33 14 of 4 0.73Down
Larval midgut26 41 of 4 0.58Down
Larval tubule48 24 of 4 1.10None
Larval hindgut28 14 of 4 0.63Down
Larval fat body50 104 of 4 1.10None
Larval trachea36 54 of 4 0.80Down
Larval carcass22 22 of 4 0.50Down
S2 cells (growing)38 04 of 4 0.85Down
Whole fly45 24 of 4

Looking for FBgn0035254. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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