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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035256 through 18771 annotations produced 1 hits



(CG13930):

Annotation Number : CG13930
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035256
Gbrowse : chr3L:1670471-1672705 (-) // 100.0 //
Probeset : 1640436_at
Accessions : protein= NP_647645;, nucleotide= NM_139388;
Pathway : 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005875 // microtubule asso
Interpro : "0003774 // motor activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // infer
FlyMine data for FBgn0035256.
Homophila reports that CG13930 is a close match (5e-14) to human gene (NP_075462), a gene associated with .
VDRC has 2 RNAi stocks for FBgn0035256 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.60None
Head2 00 of 4 0.80None
Eye3 10 of 4 1.13None
Thoracicoabdominal ganglion5 20 of 4 1.70None
Salivary gland10 10 of 4 2.88Up
Crop4 10 of 4 1.30None
Midgut7 00 of 4 2.10Up
Tubule5 10 of 4 1.70None
Hindgut3 10 of 4 0.90None
Heart2 10 of 4 0.71None
Fat body2 10 of 4 0.60None
Ovary2 10 of 4 0.60None
Testis4 10 of 4 1.30None
Male accessory glands6 10 of 4 1.80None
Virgin spermatheca2 00 of 4 0.71None
Mated spermatheca4 10 of 4 1.20None
Adult carcass9 30 of 4 2.70None
Larval CNS2 20 of 4 0.65None
Larval Salivary gland1 00 of 4 0.39None
Larval midgut10 10 of 4 2.91Up
Larval tubule6 20 of 4 1.70None
Larval hindgut4 10 of 4 1.42None
Larval fat body7 10 of 4 2.20Up
Larval trachea2 10 of 4 0.81None
Larval carcass1 00 of 4 0.44None
S2 cells (growing)3 10 of 4 0.97None
Whole fly3 10 of 4

Looking for FBgn0035256. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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