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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035257 through 18771 annotations produced 1 hits



(CG12011):

Annotation Number : CG12011
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035257
Gbrowse : chr3L:1694618-1696420 (+) // 100.0 //
Probeset : 1623821_at
Accessions : protein= NP_647646;, nucleotide= NM_139389;
FlyMine data for FBgn0035257.
BDGP gene expression has embryonic in situ data for CG12011: 33 pix of staining in 4 body parts.
BioGrid reports that CG12011 interacts with CG8414 .
VDRC has 2 RNAi stocks for FBgn0035257 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 20 of 4 0.30Down
Head10 ± 20 of 4 0.30Down
Eye5 ± 20 of 4 0.12Down
Thoracicoabdominal ganglion14 ± 30 of 4 0.30Down
Salivary gland13 ± 30 of 4 0.32Down
Crop15 ± 40 of 4 0.40Down
Midgut9 ± 20 of 4 0.20Down
Tubule5 ± 00 of 4 0.10Down
Hindgut12 ± 20 of 4 0.30Down
Heart5 ± 10 of 4 0.12Down
Fat body15 ± 40 of 4 0.35Down
Ovary3 ± 10 of 4 0.10Down
Testis5 ± 00 of 4 0.10Down
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca8 ± 10 of 4 0.19Down
Mated spermatheca9 ± 30 of 4 0.21Down
Adult carcass9 ± 40 of 4 0.20Down
Larval CNS12 ± 22 of 4 0.28Down
Larval Salivary gland9 ± 10 of 4 0.22Down
Larval midgut8 ± 10 of 4 0.20Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut5 ± 10 of 4 0.13Down
Larval fat body16 ± 50 of 4 0.40Down
Larval trachea5 ± 10 of 4 0.13Down
Larval carcass7 ± 10 of 4 0.18Down
S2 cells (growing)12 ± 00 of 4 0.29Down
Whole fly43 ± 64 of 4

Looking for FBgn0035257. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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