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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035258 through 18771 annotations produced 1 hits



(CG13931):

Annotation Number : CG13931
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035258
Gbrowse : chr3L:1701394-1701883 (-) // 100.0 //
Probeset : 1636135_at
Accessions : protein= NP_647647;, nucleotide= NM_139390;
FlyMine data for FBgn0035258.
VDRC has 3 RNAi stocks for FBgn0035258 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.70None
Head12 ± 13 of 4 4.30Up
Eye95 ± 194 of 431.58Up
Thoracicoabdominal ganglion2 ± 10 of 4 0.80None
Salivary gland2 ± 00 of 4 0.69None
Crop1 ± 10 of 4 0.60None
Midgut5 ± 20 of 4 1.80None
Tubule2 ± 00 of 4 0.80None
Hindgut1 ± 00 of 4 0.30None
Heart4 ± 10 of 4 1.41None
Fat body1 ± 00 of 4 0.61None
Ovary0 ± 00 of 4 0.30None
Testis0 ± 00 of 4 0.30None
Male accessory glands1 ± 00 of 4 0.40None
Virgin spermatheca2 ± 10 of 4 0.72None
Mated spermatheca0 ± 00 of 4 0.17None
Adult carcass3 ± 10 of 4 1.10None
Larval CNS2 ± 10 of 4 0.77None
Larval Salivary gland2 ± 10 of 4 0.87None
Larval midgut3 ± 10 of 4 1.11None
Larval tubule0 ± 00 of 4 0.30None
Larval hindgut2 ± 00 of 4 0.69None
Larval fat body3 ± 10 of 4 1.10None
Larval trachea7 ± 42 of 4 2.45None
Larval carcass3 ± 00 of 4 1.17None
S2 cells (growing)3 ± 00 of 4 1.09None
Whole fly3 ± 10 of 4

Looking for FBgn0035258. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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