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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035262 through 18771 annotations produced 1 hits



(CG18171):

Annotation Number : CG18171
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035262
Gbrowse : chr3L:1720742-1723153 (-) // 100.0 //
Probeset : 1638968_at
Accessions : protein= NP_647651;, nucleotide= NM_139394;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0035262.
BioGrid reports that CG18171 interacts with CG9291 .
VDRC has 3 RNAi stocks for FBgn0035262 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head1 00 of 4 0.00Down
Eye1 00 of 4 0.06Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland3 10 of 4 0.14Down
Crop2 10 of 4 0.10Down
Midgut1 00 of 4 0.00Down
Tubule2 10 of 4 0.10Down
Hindgut1 00 of 4 0.00Down
Heart2 10 of 4 0.11Down
Fat body1 00 of 4 0.05Down
Ovary3 10 of 4 0.10Down
Testis404 24 of 415.50Up
Male accessory glands2 10 of 4 0.10Down
Virgin spermatheca1 10 of 4 0.05Down
Mated spermatheca1 00 of 4 0.04Down
Adult carcass2 00 of 4 0.10Down
Larval CNS2 10 of 4 0.09Down
Larval Salivary gland5 20 of 4 0.20Down
Larval midgut1 00 of 4 0.04Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut0 00 of 4 0.02Down
Larval fat body24 161 of 4 0.90None
Larval trachea5 30 of 4 0.20Down
Larval carcass6 10 of 4 0.26Down
S2 cells (growing)5 10 of 4 0.19Down
Whole fly26 34 of 4

Looking for FBgn0035262. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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