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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035266 through 18771 annotations produced 1 hits



(CG7995):

Annotation Number : CG7995
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035266
Gbrowse : chr3L:1738571-1745430 (+) // 100.0 //
Probeset : 1633956_s_at
Accessions : protein= NP_647655; /// NP_728664; /// NP_728665; /// NP_728666; /// NP_728667;, nucleotide= NM_139398; /// NM_167912; /// NM_167913; /// NM_167914; /// NM_167915;
Interpro : "0004370 // glycerol kinase activity // inferred from sequence or structural similarity /// 0004370 // glycerol kinase a
FlyMine data for FBgn0035266.
Homophila reports that CG7995 is a close match (8e-143) to human gene GK (NP_976325), a gene associated with Glycerol kinase deficiency, 307030 (3).
BioGrid reports that CG7995 interacts with CG7997 CG8317 .
TRiP has 1 RNAi stocks for FBgn0035266 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035266 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 54 of 4 0.20Down
Head361 324 of 4 1.00None
Eye92 174 of 4 0.25Down
Thoracicoabdominal ganglion138 64 of 4 0.40Down
Salivary gland1727 1214 of 4 4.72Up
Crop659 444 of 4 1.80Up
Midgut663 184 of 4 1.80Up
Tubule24 43 of 4 0.10Down
Hindgut475 134 of 4 1.30Up
Heart468 284 of 4 1.28Up
Fat body1836 614 of 4 5.02Up
Ovary598 144 of 4 1.60Up
Testis102 34 of 4 0.30Down
Male accessory glands243 194 of 4 0.70Down
Virgin spermatheca1671 1064 of 4 4.57Up
Mated spermatheca1445 1894 of 4 3.95Up
Adult carcass743 184 of 4 2.00Up
Larval CNS151 64 of 4 0.41Down
Larval Salivary gland184 124 of 4 0.50Down
Larval midgut859 214 of 4 2.35Up
Larval tubule22 14 of 4 0.10Down
Larval hindgut160 234 of 4 0.44Down
Larval fat body426 394 of 4 1.20None
Larval trachea121 284 of 4 0.33Down
Larval carcass469 854 of 4 1.28None
S2 cells (growing)29 34 of 4 0.08Down
Whole fly366 124 of 4

Looking for FBgn0035266. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime