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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035281 through 18771 annotations produced 1 hits

CG1919 (Cpr62Bc):

Annotation Number : CG1919
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035281
Gbrowse : chr3L:1840277-1842080 (-) // 100.0 //
Probeset : 1638896_at
Accessions : protein= NP_647668;, nucleotide= NM_139411;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0035281.
BDGP gene expression has embryonic in situ data for CG1919: 29 pix of staining in 11 body parts.
BioGrid reports that CG1919 interacts with CG7056 CG7813 .
VDRC has 1 RNAi stocks for FBgn0035281 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head16 04 of 4 0.90None
Eye103 214 of 4 5.76Up
Thoracicoabdominal ganglion3 10 of 4 0.20Down
Salivary gland9 51 of 4 0.52None
Crop5 20 of 4 0.30Down
Midgut4 10 of 4 0.20Down
Tubule6 01 of 4 0.30Down
Hindgut4 10 of 4 0.20Down
Heart5 31 of 4 0.30Down
Fat body9 52 of 4 0.55None
Ovary3 10 of 4 0.20Down
Testis2 00 of 4 0.10Down
Male accessory glands13 12 of 4 0.70None
Virgin spermatheca10 22 of 4 0.60None
Mated spermatheca12 14 of 4 0.68None
Adult carcass21 52 of 4 1.20None
Larval CNS5 14 of 4 0.29Down
Larval Salivary gland13 20 of 4 0.73None
Larval midgut4 01 of 4 0.26Down
Larval tubule5 11 of 4 0.30Down
Larval hindgut5 01 of 4 0.28Down
Larval fat body4 20 of 4 0.30Down
Larval trachea4058 6884 of 4226.72Up
Larval carcass50 164 of 4 2.79None
S2 cells (growing)2 00 of 4 0.11Down
Whole fly17 33 of 4

Looking for FBgn0035281. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime