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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035282 through 18771 annotations produced 1 hits



(CG13936):

Annotation Number : CG13936
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035282
Gbrowse : chr3L:1851347-1852240 (-) // 100.0 //
Probeset : 1638184_at
Accessions : protein= NP_647669;, nucleotide= NM_139412;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035282.
BioGrid reports that CG13936 interacts with CG7399 .
VDRC has 2 RNAi stocks for FBgn0035282 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 10 of 4 2.40None
Head8 ± 21 of 4 1.90None
Eye10 ± 10 of 4 2.14Up
Thoracicoabdominal ganglion6 ± 20 of 4 1.40None
Salivary gland9 ± 10 of 4 2.07Up
Crop1 ± 00 of 4 0.30None
Midgut3 ± 10 of 4 0.70None
Tubule3 ± 00 of 4 0.60Down
Hindgut7 ± 10 of 4 1.60None
Heart14 ± 11 of 4 3.11Up
Fat body33 ± 52 of 4 7.02Up
Ovary3 ± 10 of 4 0.70None
Testis7 ± 02 of 4 1.70None
Male accessory glands1 ± 00 of 4 0.40None
Virgin spermatheca8 ± 10 of 4 1.72None
Mated spermatheca25 ± 20 of 4 5.27Up
Adult carcass11 ± 31 of 4 2.40None
Larval CNS3 ± 30 of 4 0.80None
Larval Salivary gland1 ± 00 of 4 0.32None
Larval midgut17 ± 10 of 4 3.62Up
Larval tubule3 ± 10 of 4 0.60None
Larval hindgut2 ± 10 of 4 0.49None
Larval fat body20 ± 33 of 4 4.30Up
Larval trachea8 ± 10 of 4 1.76None
Larval carcass2 ± 00 of 4 0.58None
S2 cells (growing)17 ± 43 of 4 3.59None
Whole fly4 ± 10 of 4

Looking for FBgn0035282. 1 entries matched from 18771, in 4 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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