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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035293 through 18771 annotations produced 1 hits



(CG5687):

Annotation Number : CG5687
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035293
Gbrowse : chr3L:1933630-1938740 (-) // 100.0 //
Probeset : 1631168_at
Accessions : protein= NP_647678;, nucleotide= NM_139421;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008507 // sodium:iodide symporter activity /
FlyMine data for FBgn0035293.
Homophila reports that CG5687 is a close match (2e-78) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).
VDRC has 1 RNAi stocks for FBgn0035293 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain558 ± 174 of 4 6.60Up
Head348 ± 114 of 4 4.10Up
Eye209 ± 164 of 4 2.49Up
Thoracicoabdominal ganglion866 ± 114 of 410.30Up
Salivary gland13 ± 20 of 4 0.15Down
Crop15 ± 21 of 4 0.20Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut19 ± 14 of 4 0.20Down
Heart25 ± 34 of 4 0.31Down
Fat body12 ± 60 of 4 0.15Down
Ovary2 ± 00 of 4 0.00Down
Testis31 ± 04 of 4 0.40Down
Male accessory glands30 ± 33 of 4 0.40Down
Virgin spermatheca34 ± 153 of 4 0.41Down
Mated spermatheca24 ± 132 of 4 0.30Down
Adult carcass217 ± 154 of 4 2.60Up
Larval CNS143 ± 264 of 4 1.70Up
Larval Salivary gland0 ± 00 of 4 0.01Down
Larval midgut0 ± 00 of 4 0.01Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut7 ± 12 of 4 0.09Down
Larval fat body6 ± 10 of 4 0.10Down
Larval trachea18 ± 63 of 4 0.21Down
Larval carcass81 ± 114 of 4 0.97None
S2 cells (growing)1 ± 10 of 4 0.02Down
Whole fly84 ± 44 of 4

Looking for FBgn0035293. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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