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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035294 through 18771 annotations produced 1 hits

microfibril-associated protein 1 (Mfap1):

Annotation Number : CG1017
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035294
Gbrowse : chr3L:1941061-1942872 (+) // 100.0 //
Probeset : 1641198_at
Accessions : protein= NP_647679;, nucleotide= NM_139422;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from mutant phenotype /// 0010389 // regulation of G2/M transition of mitotic cell cycle //
FlyMine data for FBgn0035294.
BDGP gene expression has embryonic in situ data for CG1017: 27 pix of staining in 6 body parts.
BioGrid reports that CG1017 interacts with CG1135 CG11508 CG1975 CG30342 CG8364 CG1064 CG11896 CG12470 CG5303 CG5792 .
TRiP has 1 RNAi stocks for FBgn0035294 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035294 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain139 44 of 4 1.90Up
Head84 74 of 4 1.20None
Eye119 34 of 4 1.64Up
Thoracicoabdominal ganglion106 64 of 4 1.50Up
Salivary gland127 122 of 4 1.74Up
Crop82 24 of 4 1.10Up
Midgut59 30 of 4 0.80Down
Tubule57 24 of 4 0.80Down
Hindgut67 14 of 4 0.90Down
Heart54 64 of 4 0.75None
Fat body57 84 of 4 0.79Down
Ovary134 54 of 4 1.90Up
Testis68 64 of 4 0.90None
Male accessory glands95 84 of 4 1.30None
Virgin spermatheca49 44 of 4 0.68Down
Mated spermatheca58 34 of 4 0.81Down
Adult carcass48 31 of 4 0.70Down
Larval CNS140 34 of 4 1.93Up
Larval Salivary gland72 24 of 4 1.00None
Larval midgut43 13 of 4 0.59Down
Larval tubule63 14 of 4 0.90Down
Larval hindgut78 44 of 4 1.07None
Larval fat body71 43 of 4 1.00None
Larval trachea90 94 of 4 1.25Up
Larval carcass71 24 of 4 0.99None
S2 cells (growing)133 24 of 4 1.83Up
Whole fly72 11 of 4

Looking for FBgn0035294. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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