FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035295 through 18771 annotations produced 1 hits

(CG5690):

Annotation Number : CG5690
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035295
Gbrowse : chr3L:1947859-1950265 (+) // 100.0 //
Probeset : 1629577_at
Accessions : protein= NP_647680;, nucleotide= NM_139423;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0030528 // transcription regulator activity // inferred from electronic annotation
FlyMine data for FBgn0035295.
BDGP gene expression has embryonic in situ data for CG5690: 23 pix of staining in 14 body parts.
VDRC has 2 RNAi stocks for FBgn0035295 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	1 of 4	0.10	Down
Head	10 ± 0	3 of 4	0.20	Down
Eye	5 ± 2	0 of 4	0.11	Down
Thoracicoabdominal ganglion	6 ± 1	1 of 4	0.10	Down
Salivary gland	16 ± 3	1 of 4	0.33	Down
Crop	20 ± 3	4 of 4	0.40	Down
Midgut	9 ± 3	0 of 4	0.20	Down
Tubule	6 ± 2	0 of 4	0.10	Down
Hindgut	10 ± 2	2 of 4	0.20	Down
Heart	8 ± 0	3 of 4	0.18	Down
Fat body	10 ± 3	3 of 4	0.22	Down
Ovary	127 ± 4	4 of 4	2.60	Up
Testis	48 ± 1	4 of 4	1.00	None
Male accessory glands	23 ± 4	3 of 4	0.50	Down
Virgin spermatheca	10 ± 1	3 of 4	0.22	Down
Mated spermatheca	9 ± 1	2 of 4	0.19	Down
Adult carcass	14 ± 2	1 of 4	0.30	Down
Larval CNS	85 ± 6	4 of 4	1.75	Up
Larval Salivary gland	39 ± 2	4 of 4	0.82	None
Larval midgut	7 ± 2	0 of 4	0.15	Down
Larval tubule	7 ± 0	0 of 4	0.20	Down
Larval hindgut	21 ± 2	4 of 4	0.44	Down
Larval fat body	20 ± 4	3 of 4	0.40	Down
Larval trachea	53 ± 2	4 of 4	1.09	None
Larval carcass	22 ± 1	4 of 4	0.47	Down
S2 cells (growing)	39 ± 2	4 of 4	0.81	None
Whole fly	48 ± 6	4 of 4

Looking for FBgn0035295. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720