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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035295 through 18771 annotations produced 1 hits



(CG5690):

Annotation Number : CG5690
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035295
Gbrowse : chr3L:1947859-1950265 (+) // 100.0 //
Probeset : 1629577_at
Accessions : protein= NP_647680;, nucleotide= NM_139423;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0030528 // transcription regulator activity // inferred from electronic annotation
FlyMine data for FBgn0035295.
BDGP gene expression has embryonic in situ data for CG5690: 23 pix of staining in 14 body parts.
VDRC has 2 RNAi stocks for FBgn0035295 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 0.10Down
Head10 03 of 4 0.20Down
Eye5 20 of 4 0.11Down
Thoracicoabdominal ganglion6 11 of 4 0.10Down
Salivary gland16 31 of 4 0.33Down
Crop20 34 of 4 0.40Down
Midgut9 30 of 4 0.20Down
Tubule6 20 of 4 0.10Down
Hindgut10 22 of 4 0.20Down
Heart8 03 of 4 0.18Down
Fat body10 33 of 4 0.22Down
Ovary127 44 of 4 2.60Up
Testis48 14 of 4 1.00None
Male accessory glands23 43 of 4 0.50Down
Virgin spermatheca10 13 of 4 0.22Down
Mated spermatheca9 12 of 4 0.19Down
Adult carcass14 21 of 4 0.30Down
Larval CNS85 64 of 4 1.75Up
Larval Salivary gland39 24 of 4 0.82None
Larval midgut7 20 of 4 0.15Down
Larval tubule7 00 of 4 0.20Down
Larval hindgut21 24 of 4 0.44Down
Larval fat body20 43 of 4 0.40Down
Larval trachea53 24 of 4 1.09None
Larval carcass22 14 of 4 0.47Down
S2 cells (growing)39 24 of 4 0.81None
Whole fly48 64 of 4

Looking for FBgn0035295. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime