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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035309 through 18771 annotations produced 1 hits



(CG15879):

Annotation Number : CG15879
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035309
Gbrowse : chr3L:2167770-2168969 (-) // 100.0 //
Probeset : 1636857_at
Accessions : protein= NP_647694;, nucleotide= NM_139437;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0035309.
VDRC has 2 RNAi stocks for FBgn0035309 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 00 of 4 0.40Down
Head17 14 of 4 1.10None
Eye6 01 of 4 0.42Down
Thoracicoabdominal ganglion6 21 of 4 0.40Down
Salivary gland24 63 of 4 1.57None
Crop50 14 of 4 3.20Up
Midgut85 24 of 4 5.40Up
Tubule30 03 of 4 2.00Up
Hindgut34 24 of 4 2.20Up
Heart25 14 of 4 1.59Up
Fat body48 34 of 4 3.10Up
Ovary11 04 of 4 0.70None
Testis3 10 of 4 0.20Down
Male accessory glands21 43 of 4 1.40None
Virgin spermatheca28 04 of 4 1.81Up
Mated spermatheca29 14 of 4 1.86Up
Adult carcass29 24 of 4 1.90Up
Larval CNS9 23 of 4 0.59Down
Larval Salivary gland22 13 of 4 1.43Up
Larval midgut71 94 of 4 4.55Up
Larval tubule25 22 of 4 1.60Up
Larval hindgut30 24 of 4 1.95Up
Larval fat body21 34 of 4 1.40None
Larval trachea46 104 of 4 2.94Up
Larval carcass28 24 of 4 1.83Up
S2 cells (growing)45 04 of 4 2.86Up
Whole fly15 14 of 4

Looking for FBgn0035309. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime