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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035312 through 18771 annotations produced 1 hits



(CG15820):

Annotation Number : CG15820
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035312
Gbrowse : chr3L:2173060-2174332 (-) // 100.0 //
Probeset : 1623022_at
Accessions : protein= NP_647696;, nucleotide= NM_139439;
FlyMine data for FBgn0035312.
VDRC has 2 RNAi stocks for FBgn0035312 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head1 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland7 ± 30 of 4 0.21Down
Crop2 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 10 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart2 ± 10 of 4 0.06Down
Fat body5 ± 30 of 4 0.14Down
Ovary135 ± 44 of 4 3.70Up
Testis2 ± 00 of 4 0.10Down
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca6 ± 10 of 4 0.17Down
Mated spermatheca2 ± 00 of 4 0.06Down
Adult carcass4 ± 20 of 4 0.10Down
Larval CNS6 ± 24 of 4 0.18Down
Larval Salivary gland16 ± 12 of 4 0.45Down
Larval midgut2 ± 00 of 4 0.07Down
Larval tubule400 ± 324 of 410.90Up
Larval hindgut13 ± 14 of 4 0.36Down
Larval fat body756 ± 904 of 420.50Up
Larval trachea21 ± 84 of 4 0.58Down
Larval carcass13 ± 13 of 4 0.36Down
S2 cells (growing)12 ± 14 of 4 0.35Down
Whole fly36 ± 34 of 4

Looking for FBgn0035312. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime