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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035317 through 18771 annotations produced 1 hits



osm-1 (osm-1):

Annotation Number : CG13809
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035317
Gbrowse : chr3L:2229645-2235253 (+) // 100.0 //
Probeset : 1633181_at
Accessions : protein= NP_647700;, nucleotide= NM_139443;
Pathway : 0005871 // kinesin complex // inferred from sequence or structural similarity /// 0005929 // cilium // inferred from ele
Interpro : 0003777 // microtubule motor activity // inferred from sequence or structural similarity /// 0005488 // binding // infer
FlyMine data for FBgn0035317.
VDRC has 2 RNAi stocks for FBgn0035317 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 24 of 4 2.00Up
Head22 ± 04 of 4 3.20Up
Eye13 ± 24 of 4 1.98Up
Thoracicoabdominal ganglion9 ± 14 of 4 1.30None
Salivary gland21 ± 22 of 4 2.99Up
Crop13 ± 13 of 4 1.80Up
Midgut13 ± 10 of 4 1.90Up
Tubule10 ± 02 of 4 1.40Up
Hindgut9 ± 12 of 4 1.40None
Heart8 ± 03 of 4 1.26None
Fat body8 ± 43 of 4 1.21None
Ovary3 ± 00 of 4 0.50Down
Testis4 ± 01 of 4 0.60None
Male accessory glands14 ± 20 of 4 2.10Up
Virgin spermatheca5 ± 00 of 4 0.82None
Mated spermatheca7 ± 21 of 4 1.01None
Adult carcass24 ± 24 of 4 3.40Up
Larval CNS5 ± 12 of 4 0.80None
Larval Salivary gland13 ± 13 of 4 1.97Up
Larval midgut15 ± 14 of 4 2.23Up
Larval tubule7 ± 12 of 4 1.10None
Larval hindgut7 ± 22 of 4 1.10None
Larval fat body10 ± 10 of 4 1.50None
Larval trachea7 ± 32 of 4 1.05None
Larval carcass9 ± 12 of 4 1.37None
S2 cells (growing)8 ± 03 of 4 1.25None
Whole fly7 ± 02 of 4

Looking for FBgn0035317. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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