FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035318 through 18771 annotations produced 3 hits

(CG9018):

Annotation Number : CG9018
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035318
Gbrowse : chr3L:2235634-2237072 (-) // 100.0 //
Probeset : 1627944_a_at
Accessions : protein= NP_647701; /// NP_728723;, nucleotide= NM_139444; /// NM_167938;
FlyMine data for FBgn0035318.
BDGP gene expression has embryonic in situ data for CG9018: 4 pix of staining in 2 body parts.
VDRC has 1 RNAi stocks for FBgn0035318 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	73 ± 1	4 of 4	1.40	Up
Head	38 ± 1	4 of 4	0.70	Down
Eye	52 ± 2	4 of 4	1.00	None
Thoracicoabdominal ganglion	71 ± 3	4 of 4	1.40	Up
Salivary gland	96 ± 7	4 of 4	1.85	Up
Crop	61 ± 4	4 of 4	1.20	None
Midgut	70 ± 2	4 of 4	1.40	Up
Tubule	45 ± 0	4 of 4	0.90	Down
Hindgut	53 ± 3	4 of 4	1.00	None
Heart	28 ± 2	4 of 4	0.54	Down
Fat body	39 ± 4	4 of 4	0.75	None
Ovary	91 ± 5	4 of 4	1.80	Up
Testis	71 ± 3	4 of 4	1.40	Up
Male accessory glands	45 ± 3	4 of 4	0.90	None
Virgin spermatheca	27 ± 2	4 of 4	0.53	Down
Mated spermatheca	26 ± 0	4 of 4	0.50	Down
Adult carcass	61 ± 3	4 of 4	1.20	None
Larval CNS	103 ± 5	4 of 4	1.99	Up
Larval Salivary gland	96 ± 3	4 of 4	1.85	Up
Larval midgut	56 ± 2	4 of 4	1.09	None
Larval tubule	54 ± 5	4 of 4	1.10	None
Larval hindgut	52 ± 2	4 of 4	1.01	None
Larval fat body	43 ± 2	4 of 4	0.80	None
Larval trachea	47 ± 6	4 of 4	0.91	None
Larval carcass	59 ± 6	4 of 4	1.15	None
S2 cells (growing)	134 ± 5	4 of 4	2.58	Up
Whole fly	52 ± 4	4 of 4

(CG9018):

Annotation Number : CG9018
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035318
Gbrowse : chr3L:2235283-2237053 (-) // 100.0 //
Probeset : 1640108_at
Accessions : protein= NP_647701; /// NP_728723;, nucleotide= NM_139444; /// NM_167938;
FlyMine data for FBgn0035318.
BDGP gene expression has embryonic in situ data for CG9018: 4 pix of staining in 2 body parts.
VDRC has 1 RNAi stocks for FBgn0035318 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	180 ± 5	4 of 4	1.50	Up
Head	119 ± 2	4 of 4	1.00	None
Eye	85 ± 2	4 of 4	0.70	Down
Thoracicoabdominal ganglion	159 ± 8	4 of 4	1.30	Up
Salivary gland	105 ± 7	4 of 4	0.87	None
Crop	110 ± 5	4 of 4	0.90	None
Midgut	119 ± 4	4 of 4	1.00	None
Tubule	95 ± 1	4 of 4	0.80	Down
Hindgut	99 ± 3	4 of 4	0.80	Down
Heart	53 ± 3	4 of 4	0.44	Down
Fat body	103 ± 9	4 of 4	0.85	Down
Ovary	154 ± 4	4 of 4	1.30	Up
Testis	87 ± 1	4 of 4	0.70	Down
Male accessory glands	97 ± 10	4 of 4	0.80	None
Virgin spermatheca	108 ± 3	4 of 4	0.89	None
Mated spermatheca	90 ± 3	4 of 4	0.75	Down
Adult carcass	111 ± 5	4 of 4	0.90	None
Larval CNS	223 ± 26	4 of 4	1.84	Up
Larval Salivary gland	102 ± 9	4 of 4	0.85	None
Larval midgut	114 ± 3	4 of 4	0.95	None
Larval tubule	95 ± 4	4 of 4	0.80	Down
Larval hindgut	103 ± 6	4 of 4	0.85	None
Larval fat body	86 ± 6	4 of 4	0.70	Down
Larval trachea	74 ± 10	4 of 4	0.62	Down
Larval carcass	103 ± 8	4 of 4	0.86	None
S2 cells (growing)	102 ± 3	4 of 4	0.85	Down
Whole fly	121 ± 4	4 of 4

(CG9018):

Annotation Number : CG9018
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035318
Gbrowse : chr3L:2235634-2237072 (-) // 100.0 //
Probeset : 1629852_at
Accessions : protein= NP_647701; /// NP_728723;, nucleotide= NM_139444; /// NM_167938;
FlyMine data for FBgn0035318.
BDGP gene expression has embryonic in situ data for CG9018: 4 pix of staining in 2 body parts.
VDRC has 1 RNAi stocks for FBgn0035318 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	50 ± 3	4 of 4	0.50	Down
Head	34 ± 2	4 of 4	0.30	Down
Eye	49 ± 5	4 of 4	0.51	Down
Thoracicoabdominal ganglion	54 ± 1	4 of 4	0.60	Down
Salivary gland	86 ± 6	4 of 4	0.88	None
Crop	62 ± 4	4 of 4	0.60	Down
Midgut	83 ± 1	4 of 4	0.90	Down
Tubule	59 ± 2	4 of 4	0.60	Down
Hindgut	59 ± 2	4 of 4	0.60	Down
Heart	37 ± 3	4 of 4	0.38	Down
Fat body	34 ± 3	4 of 4	0.35	Down
Ovary	201 ± 6	4 of 4	2.10	Up
Testis	146 ± 22	4 of 4	1.50	None
Male accessory glands	28 ± 4	4 of 4	0.30	Down
Virgin spermatheca	103 ± 8	4 of 4	1.06	None
Mated spermatheca	106 ± 6	4 of 4	1.09	None
Adult carcass	34 ± 3	4 of 4	0.40	Down
Larval CNS	87 ± 2	4 of 4	0.90	Down
Larval Salivary gland	178 ± 3	4 of 4	1.83	Up
Larval midgut	102 ± 5	4 of 4	1.05	None
Larval tubule	123 ± 5	4 of 4	1.30	Up
Larval hindgut	79 ± 2	4 of 4	0.81	Down
Larval fat body	92 ± 15	4 of 4	0.90	None
Larval trachea	58 ± 5	4 of 4	0.60	Down
Larval carcass	106 ± 8	4 of 4	1.09	None
S2 cells (growing)	105 ± 4	4 of 4	1.08	None
Whole fly	97 ± 3	4 of 4

Looking for FBgn0035318. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720