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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035325 through 18771 annotations produced 1 hits



(CG13806):

Annotation Number : CG13806
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035325
Gbrowse : chr3L:2266393-2267643 (+) // 100.0 //
Probeset : 1626285_at
Accessions : protein= NP_647708;, nucleotide= NM_139451;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0035325.
BDGP gene expression has embryonic in situ data for CG13806: 12 pix of staining in 3 body parts.
BioGrid reports that CG13806 interacts with CG1999 CG3075 CG14578 .
VDRC has 2 RNAi stocks for FBgn0035325 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head8 ± 23 of 4 0.40Down
Eye2 ± 10 of 4 0.09Down
Thoracicoabdominal ganglion8 ± 13 of 4 0.40Down
Salivary gland19 ± 50 of 4 0.86None
Crop14 ± 42 of 4 0.60None
Midgut224 ± 74 of 4 9.80Up
Tubule5 ± 00 of 4 0.20Down
Hindgut5 ± 12 of 4 0.20Down
Heart2 ± 01 of 4 0.11Down
Fat body5 ± 10 of 4 0.24Down
Ovary5 ± 10 of 4 0.20Down
Testis30 ± 14 of 4 1.30Up
Male accessory glands17 ± 24 of 4 0.80None
Virgin spermatheca4 ± 10 of 4 0.21Down
Mated spermatheca4 ± 00 of 4 0.20Down
Adult carcass14 ± 31 of 4 0.60None
Larval CNS6 ± 02 of 4 0.29Down
Larval Salivary gland9 ± 10 of 4 0.40Down
Larval midgut1371 ± 904 of 460.07Up
Larval tubule69 ± 94 of 4 3.00Up
Larval hindgut22 ± 24 of 4 0.98None
Larval fat body12 ± 20 of 4 0.50Down
Larval trachea4 ± 31 of 4 0.21Down
Larval carcass7 ± 03 of 4 0.32Down
S2 cells (growing)4 ± 01 of 4 0.21Down
Whole fly22 ± 24 of 4

Looking for FBgn0035325. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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