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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035332 through 18771 annotations produced 1 hits



(CG13801):

Annotation Number : CG13801
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035332
Gbrowse : chr3L:2360565-2362638 (+) // 100.0 //
Probeset : 1627836_at
Accessions : protein= NP_647714;, nucleotide= NM_139457;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0015137 // citrate transmembrane transporter activity // inferred from electronic annotation
FlyMine data for FBgn0035332.
Homophila reports that CG13801 is a close match (7e-53) to human gene BOCA;D15S12;EYCL3;HCL3;OCA2;P;PED;SHEP1 (NP_000266), a gene associated with Albinism, brown oculocutaneous, 203200 (3);Albinism, oculocutaneous, type II, 203200 (3);[Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3);[Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3).
VDRC has 2 RNAi stocks for FBgn0035332 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.40Down
Head4 ± 10 of 4 0.40Down
Eye1 ± 00 of 4 0.13Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.40Down
Salivary gland8 ± 30 of 4 0.94None
Crop3 ± 00 of 4 0.40Down
Midgut6 ± 10 of 4 0.70None
Tubule3 ± 00 of 4 0.40Down
Hindgut2 ± 00 of 4 0.30Down
Heart5 ± 10 of 4 0.57Down
Fat body7 ± 21 of 4 0.74None
Ovary3 ± 11 of 4 0.40Down
Testis53 ± 24 of 4 5.70Up
Male accessory glands4 ± 10 of 4 0.40Down
Virgin spermatheca5 ± 00 of 4 0.56Down
Mated spermatheca6 ± 00 of 4 0.68None
Adult carcass3 ± 10 of 4 0.30Down
Larval CNS2 ± 00 of 4 0.31Down
Larval Salivary gland4 ± 10 of 4 0.49Down
Larval midgut7 ± 11 of 4 0.82None
Larval tubule4 ± 01 of 4 0.50Down
Larval hindgut2 ± 10 of 4 0.28Down
Larval fat body19 ± 42 of 4 2.10None
Larval trachea2 ± 10 of 4 0.26Down
Larval carcass2 ± 00 of 4 0.22Down
S2 cells (growing)2 ± 11 of 4 0.29Down
Whole fly9 ± 12 of 4

Looking for FBgn0035332. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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