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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035333 through 18771 annotations produced 1 hits



(CG1317):

Annotation Number : CG1317
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035333
Gbrowse : chr3L:2368013-2371960 (-) // 99.62 //
Probeset : 1623889_at
Accessions : protein= NP_001163328; /// NP_647715;, nucleotide= NM_001169857; /// NM_139458;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0035333.
BioGrid reports that CG1317 interacts with CG7546 .
VDRC has 1 RNAi stocks for FBgn0035333 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain709 ± 154 of 4 3.30Up
Head431 ± 84 of 4 2.00Up
Eye722 ± 364 of 4 3.32Up
Thoracicoabdominal ganglion698 ± 124 of 4 3.20Up
Salivary gland414 ± 84 of 4 1.91Up
Crop372 ± 54 of 4 1.70Up
Midgut364 ± 74 of 4 1.70Up
Tubule588 ± 94 of 4 2.70Up
Hindgut386 ± 104 of 4 1.80Up
Heart431 ± 184 of 4 1.99Up
Fat body473 ± 474 of 4 2.18Up
Ovary182 ± 44 of 4 0.80Down
Testis91 ± 64 of 4 0.40Down
Male accessory glands420 ± 84 of 4 1.90Up
Virgin spermatheca398 ± 124 of 4 1.83Up
Mated spermatheca391 ± 234 of 4 1.80Up
Adult carcass344 ± 244 of 4 1.60Up
Larval CNS271 ± 34 of 4 1.25Up
Larval Salivary gland283 ± 64 of 4 1.30Up
Larval midgut313 ± 94 of 4 1.44Up
Larval tubule382 ± 114 of 4 1.80Up
Larval hindgut278 ± 84 of 4 1.28Up
Larval fat body249 ± 154 of 4 1.10None
Larval trachea256 ± 204 of 4 1.18Up
Larval carcass247 ± 84 of 4 1.14Up
S2 cells (growing)309 ± 54 of 4 1.42Up
Whole fly217 ± 54 of 4

Looking for FBgn0035333. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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